Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01781 ATGGAGTTTGGATTTTTTCGTGGCCTGCCAGAGAATCTCTTTATACTGGACATCATAGGACAAATAGCTTTTCTTGTAGACATTGTTTTGCAGTTCTTTGTCGCTTTTAGAGACAGTCAAACCTATCACATGGTCTACAGGCGTACTCCTATTGCTCTGCGGTATCTAAAATCTAGTTTTGTCATTGATCTTCTTGGATGTATGCCCTGGGACCTCATCTACAAGGCTTGTGGACGGAGAGAGGAAGTGAGGTTCCTATTGTGGATCAGATTATATAGGGCGCAGAGAGTCGTGCAATTTTTCAGGAATTTGGAAAAAGACATACGTGTCAATTACATTATTGCTCGGATTGTGAAGCTTTTAGTTGTTGAACTCTACTGCACCCACACCGCAGCTTGCATTTTCTATTATTTGGCTACTACACTACCTGAATCGCAAGAGGGTTACACGTGGATAGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAAATTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCAATGTATTTTGCTATTGTTACGATGGCTACTGTTGGCTATGGTGATATACATGCTGTAAATATGAGGGAGATGATATTCATAATGGTTTATGTTTCATTTGATATGGTTCTTGGTGCTTATTTGATCGGTAACATGACGGCTTTAATAGTCAAGGGATCAAAGACTGAAAAGTTTAGGGACAGGATGACAGATTTGATGAAATATATGAATAGAAATAAACTTGGTAGGGATATCCGTGAACAAATAAAGGGTCATGTTCGCTTGCAGTTTGAGAGCAGCTACACCGACGCTGCTGTCCTTAAGGACATTCCCATTTCTATTCGATCTAAGATATCCCAATCATTGTATTTGCCATATATTGAAAACATTCCTCTTTTTAAAGAATGCTCTTCAGAATTCATCAACCAGATTGTTACTAGGCTCCATGAGGAATTCTTTCTTCCAGGAGAAGTCATAATGCAACAAGGACACGCTGTTGATCAACTATATTTTGTCTGTGATGGTGTGCTGGAAGAAGTAGGCACAGCTGACGATGGGTCCGAAGAAACTGTTTCACTTTTAGAGCGCAATAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGTGTTTGTGAACTGTGTAGGGTCCTGCGGCTTGATAAACAATCATTTTCAAATATCTTAGATATATACTTTTATGATGGGAAGAAAGTATTAGACAATCTTGTAGAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAATAGAGCAGCTTTTGATGGTGATATGTATCAGCTAATAAGTTTGATTCGAGCTGGAGCTGATCCAAAGAAGACAGATTATGATGGAAGGTCACCTTTGCATCTTGCGGCATGCAGAGGATATGAAGATATCACACTTCTCCTAATTCATGAAGGTGTAGAGATCAACATCAAAGATAACTTCGGGAACACACCACTACTTGAAGCAGTTAAGAATGGACACGATCGGATTGCTTCTTTACTTGTTAGGGAAGGGGCCTCTATGAAGATAGATGATGGTGGTAGTTTTTTATGCCAAGCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCCAATTTGAAAAATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCAAAGTTGCTATTAGAAGCTGGAGCCAGTGTTTTTACTAAAGACAGGTGGGGAAATACTCCGCTTGATGAAGCTCGAATGAGTGGAAATAAGAATCTGATAAAGATGCTGGAAGATGCAAAATCTGCTCAGTTGACAGAATACCCTTTTCCCCAAGAAATTACAGATAAAGTACATCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCATGGGATCCAAAAGAGTGTAGAAAAAATGGAATAGTATTATGGGTTCCACACACCATTGAAGAGCTAATCAAAACAGCAGCAGAACAGATAGGATTTTCTAGTGACTCTTGTATTTTATCAGAAGATGCTGGTAAAATTATTGATGTGGGCATGATTAAGGATGATCAGAAACTGTATTTAGTCCTTGAAACACATTAG 2181 0.3897 MEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAFRDSQTYHMVYRRTPIALRYLKSSFVIDLLGCMPWDLIYKACGRREEVRFLLWIRLYRAQRVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSKFREIDLWKRYTTSMYFAIVTMATVGYGDIHAVNMREMIFIMVYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNKLGRDIREQIKGHVRLQFESSYTDAAVLKDIPISIRSKISQSLYLPYIENIPLFKECSSEFINQIVTRLHEEFFLPGEVIMQQGHAVDQLYFVCDGVLEEVGTADDGSEETVSLLERNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILDIYFYDGKKVLDNLVEGKESIRGKQLESDITFHIGKLESELALKVNRAAFDGDMYQLISLIRAGADPKKTDYDGRSPLHLAACRGYEDITLLLIHEGVEINIKDNFGNTPLLEAVKNGHDRIASLLVREGASMKIDDGGSFLCQAVARGDSDYLKRLLSNGMDPNLKNYDYRTPLHVAASEGLIFMAKLLLEAGASVFTKDRWGNTPLDEARMSGNKNLIKMLEDAKSAQLTEYPFPQEITDKVHPKKCTVFPFHPWDPKECRKNGIVLWVPHTIEELIKTAAEQIGFSSDSCILSEDAGKIIDVGMIKDDQKLYLVLETH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01781 726 SMART ANK_2a 542 571 IPR002110 GO:0005515
Vivi7g01781 726 SMART ANK_2a 575 604 IPR002110 GO:0005515
Vivi7g01781 726 SMART ANK_2a 608 638 IPR002110 GO:0005515
Vivi7g01781 726 SMART ANK_2a 511 540 IPR002110 GO:0005515
Vivi7g01781 726 SMART ANK_2a 478 507 IPR002110 GO:0005515
Vivi7g01781 726 CDD CAP_ED 302 408 IPR000595 -
Vivi7g01781 726 Pfam KHA, dimerisation domain of potassium ion channel 652 721 IPR021789 -
Vivi7g01781 726 Pfam Ankyrin repeats (3 copies) 453 541 IPR002110 GO:0005515
Vivi7g01781 726 Pfam Ankyrin repeats (3 copies) 547 629 IPR002110 GO:0005515
Vivi7g01781 726 PANTHER POTASSIUM CHANNEL AKT1 1 722 IPR045319 GO:0005249|GO:0006813
Vivi7g01781 726 Gene3D - 442 541 IPR036770 -
Vivi7g01781 726 PRINTS EAG/ELK/ERG potassium channel family signature 218 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi7g01781 726 PRINTS EAG/ELK/ERG potassium channel family signature 17 27 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi7g01781 726 PRINTS EAG/ELK/ERG potassium channel family signature 174 191 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi7g01781 726 PRINTS EAG/ELK/ERG potassium channel family signature 126 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat profile. 542 574 IPR002110 GO:0005515
Vivi7g01781 726 SUPERFAMILY Voltage-gated potassium channels 8 227 - -
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat region circular profile. 478 510 - -
Vivi7g01781 726 Gene3D - 542 638 IPR036770 -
Vivi7g01781 726 FunFam Potassium channel KAT2 290 427 - -
Vivi7g01781 726 Pfam Cyclic nucleotide-binding domain 322 406 IPR000595 -
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat region circular profile. 575 607 - -
Vivi7g01781 726 FunFam Potassium channel SKOR 1 227 - -
Vivi7g01781 726 ProSiteProfiles cAMP/cGMP binding motif profile. 302 405 IPR000595 -
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat profile. 511 543 IPR002110 GO:0005515
Vivi7g01781 726 Pfam Ion transport protein 12 227 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat profile. 478 510 IPR002110 GO:0005515
Vivi7g01781 726 ProSiteProfiles Ankyrin repeat region circular profile. 511 542 - -
Vivi7g01781 726 SMART cnmp_10 302 420 IPR000595 -
Vivi7g01781 726 SUPERFAMILY cAMP-binding domain-like 230 419 IPR018490 -
Vivi7g01781 726 Gene3D - 3 228 - -
Vivi7g01781 726 SUPERFAMILY Ankyrin repeat 452 630 IPR036770 -
Vivi7g01781 726 Gene3D Jelly Rolls 286 423 IPR014710 -
Vivi7g01781 726 Gene3D Helix hairpin bin 229 285 - -
Vivi7g01781 726 ProSiteProfiles KHA domain profile. 653 726 IPR021789 -
Vivi7g01781 726 PRINTS Ankyrin repeat signature 479 494 IPR002110 GO:0005515
Vivi7g01781 726 PRINTS Ankyrin repeat signature 591 605 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01781 Vivi-Chr7 76698637 76707814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01781 549 628 Ion Channels AT5G37500 32.353 2.18e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01781 K21867 - gmx:100814385 1275