Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01724 ATGGCACTGTTCTCAACTAACATCAAGGTTCTTGCCATTCATCATGATGCTATTCTGCTTGATCGAATTCAACAAATGTGTGATCGATGTCATTATTTACTAACCAAATGCACTTCAGCTTATCATGCTCTTAATCTTCTTGCGCAAAGAAATGGTTATTTTGATATGATGTTGATTGATGTTTGTATGCCAGACATGGATTCCTATGAGTTTCTGCGATATGTAACCCTACAGCACAGAATTCCTGTCATTGTGATTTCTTCTGATGGCTCAAAAAGTTCTGTCATGAATTCTGTAATTTACGGAGCTTGTGATTACTGGGTTCAACCTTTGCATGAAAAACAATTCAAGACCATGTGGCAGCACGTTGCAAGAAACAATTTCAATGAGAATAAAGCTGAACATCATGTTCCAAGTGATCAACAACATCATGTTCTTGGATTCTTGGATGCTCAAAGCCCTAAAGAAGATGAAGTTCTTGGATTCTTGAAAGCACAAAGCCCTAAAGAAGATGAAGTTGTTGGATTCTTGGAGGCTCCTGAGCATGAAAGAAAACGGGAGAGAGAAGATGATAAACCTTCAAAAGAAAAAAGTGGAAAAAAGAGTCGGTTATCATGGACGCCGCAACTGCACCAACAGTTTCTAAATGCAGTGAACCAAGTTGGCTTTGATGAGGCAAAACCTAGAAATATTCTCAAAAGAATGGATGTTTGTGGTTTAACAACAGCTCAGGTTGCAAGTCATTTGCAGAAGTATAGAAATTATTTGAAGGGACCATCTTGTGGAAAAAAGTCAAACAAAAGTCAAAGAATTGACACTCCAACTAAAACAGCATCAGAAACTGAAGATGCTAACTCAGTGTTACATCATGAGAACCAAAGTTGTCAACTGAACTCAACCCTTCAAAGTTACAATATCTCTGAAACACAACAAGATTCAAATCATGACATCGGCTATAATTATGAAGCACAACAACATTCAATTCATGTTACTGATAATCAAGTTTCTGACATTATTAACAAGGATTTTCCTGGTGCATCTGACTTGCTCTTAGATTTAGATGATGAGTTATTGTCATTATTATTTTGA 1089 0.3673 MALFSTNIKVLAIHHDAILLDRIQQMCDRCHYLLTKCTSAYHALNLLAQRNGYFDMMLIDVCMPDMDSYEFLRYVTLQHRIPVIVISSDGSKSSVMNSVIYGACDYWVQPLHEKQFKTMWQHVARNNFNENKAEHHVPSDQQHHVLGFLDAQSPKEDEVLGFLKAQSPKEDEVVGFLEAPEHERKREREDDKPSKEKSGKKSRLSWTPQLHQQFLNAVNQVGFDEAKPRNILKRMDVCGLTTAQVASHLQKYRNYLKGPSCGKKSNKSQRIDTPTKTASETEDANSVLHHENQSCQLNSTLQSYNISETQQDSNHDIGYNYEAQQHSIHVTDNQVSDIINKDFPGASDLLLDLDDELLSLLF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01724 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 257 IPR017930 -
Vivi7g01724 362 SUPERFAMILY Homeodomain-like 199 257 IPR009057 -
Vivi7g01724 362 MobiDBLite consensus disorder prediction 261 284 - -
Vivi7g01724 362 MobiDBLite consensus disorder prediction 258 284 - -
Vivi7g01724 362 Gene3D - 198 258 - -
Vivi7g01724 362 Gene3D - 4 133 - -
Vivi7g01724 362 SUPERFAMILY CheY-like 7 132 IPR011006 -
Vivi7g01724 362 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vivi7g01724 362 FunFam Two-component response regulator 197 259 - -
Vivi7g01724 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Vivi7g01724 362 Pfam Myb-like DNA-binding domain 204 253 IPR001005 -
Vivi7g01724 362 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 288 IPR045279 GO:0009736
Vivi7g01724 362 SMART REC_2 8 120 IPR001789 GO:0000160
Vivi7g01724 362 CDD REC_typeB_ARR-like 10 124 - -
Vivi7g01724 362 Pfam Response regulator receiver domain 10 118 IPR001789 GO:0000160
Vivi7g01724 362 MobiDBLite consensus disorder prediction 174 202 - -
Vivi7g01724 362 MobiDBLite consensus disorder prediction 173 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01724 Vivi-Chr7 75422380 75423658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01724 4 257 Response Regulator Gene Family AT2G25180 33.333 2.36e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi7g01724 Response_reg 4.1e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01724 - K14491 vvo:131604459 567.385