Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01675 ATGGCAAAGGGTTCCGCTAGTAACAACTATGAAGAAGCTAGAAAACTAAGACTTGAAGAGAACAAGAAGAGGTTTCAGGATTTAGGAATTTTGACAATATCGAAAAAGTTGACTGAAATCGCAAGTCCAGCAAAGAAGTCCGCGAATCATATTTACAGACCGAAATCAAAGACCATTGTTGTAGCGGAACCTAGGCGTTCTTCTCGTGCAAGAAACCCAGTTCCTTCGTATCGTGAAGAGTTTGGCACAGACCTTCCGAATCTCCGGAAGAGGTCGGGGTCGAGGTCATTTCCATCATCATGGGAAAGTTACATTGCAAGGCCACTAGACGAAATCAAAGTAGCTACAAGTCAAGAAAGAAATCATGCTTTGGAGGCTGCAGAGGCACTCCAAATCAATTTGAACTCTTCGAAACCATCTTTTGTCAAGTCTATGGTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTTCCTAGTAGATTTTGTGAAGAACATCTTCCGAAAACAGTGTATAACATGGTTTTAGAGAATGAAGAAGGATCAGAATATGAGGCTGTTTACATTGGCAAAAGAGCTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAGTTGGATGATGGCGATGCACTTGTTTTTGAATTGGTTGAACCTGCAAGATTTAAGATTTATATTGTTAGAGCATTTCCAGATGTATATGAAGAAGAGGAAGAAGAGAAAGAAGAGAAAGAAGAAGAAAACAACACTTTGGTGGAAGAAGAAGATATGCATACACTCAAAGCAACAAAAGAATCATCTAAGGCTGCCAATAATCGCGAATCAGAACCAAAGACTAAAAAGCAAAAACTTGCCATTGTACGTGAAACTAAGGAATCAAAGAGTTCTGAAGAAAGTCTGTTTGAAAGTAGCATTGAGAAAGATGTTAAACCACAGAGGGCAAATACGAGTAGAAAAACTAAATCATCTCAGAAAAAAATGCCAAAGAAGTCTGAACTACCTATCACTCCTGATTCTGAAGCAAAAATTGAAACACCGAAACCAAAGGCAACTTCTATAAGGAACACTAGATCTTCTCAGAGAATAATGCAAAAGATATCTGAAGCATCTACTACTCTTGAACCGAAAGAGGAAGCACAAGTTGAAGCTACGAAGAAAGAACTTGTTCAGCATGATGATATTAAGTTAAAGAAAGTTGGAAGACCTCGAAAAAACCCAGCTCCTTAA 1233 0.3917 MAKGSASNNYEEARKLRLEENKKRFQDLGILTISKKLTEIASPAKKSANHIYRPKSKTIVVAEPRRSSRARNPVPSYREEFGTDLPNLRKRSGSRSFPSSWESYIARPLDEIKVATSQERNHALEAAEALQINLNSSKPSFVKSMVRSHVYSCFWLGLPSRFCEEHLPKTVYNMVLENEEGSEYEAVYIGKRAGLSGGWRAFALEHKLDDGDALVFELVEPARFKIYIVRAFPDVYEEEEEEKEEKEEENNTLVEEEDMHTLKATKESSKAANNRESEPKTKKQKLAIVRETKESKSSEESLFESSIEKDVKPQRANTSRKTKSSQKKMPKKSELPITPDSEAKIETPKPKATSIRNTRSSQRIMQKISEASTTLEPKEEAQVEATKKELVQHDDIKLKKVGRPRKNPAP 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01675 410 Gene3D - 114 232 IPR015300 -
Vivi7g01675 410 MobiDBLite consensus disorder prediction 380 402 - -
Vivi7g01675 410 MobiDBLite consensus disorder prediction 238 252 - -
Vivi7g01675 410 Pfam B3 DNA binding domain 141 229 IPR003340 GO:0003677
Vivi7g01675 410 Coils Coil 236 259 - -
Vivi7g01675 410 MobiDBLite consensus disorder prediction 238 410 - -
Vivi7g01675 410 MobiDBLite consensus disorder prediction 328 349 - -
Vivi7g01675 410 MobiDBLite consensus disorder prediction 351 376 - -
Vivi7g01675 410 ProSiteProfiles B3 DNA-binding domain profile. 141 232 IPR003340 GO:0003677
Vivi7g01675 410 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 231 IPR044837 -
Vivi7g01675 410 CDD B3_DNA 139 230 IPR003340 GO:0003677
Vivi7g01675 410 SMART B3_2 141 232 IPR003340 GO:0003677
Vivi7g01675 410 SUPERFAMILY DNA-binding pseudobarrel domain 136 230 IPR015300 -
Vivi7g01675 410 MobiDBLite consensus disorder prediction 253 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01675 Vivi-Chr7 74544981 74549994 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01675 10 231 B3 DNA Binding Superfamily AT5G58280 51.984 4.74e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi7g01675 B3 3.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01675 - - cam:101498339 469.159