Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01650 ATGTCATCTACTTTGCTAGTTGTTATGTTTTTTCTGTTCATTGAAATGTATTTTCATGGGGTCACTGCCAACTATGTTGGTTGGCAGAATGGTCATGCAACATTCTATGGCGGCGGCAATGCTGCCGCCACAATGGGAGGTGCATGTGGTTATGGAAATTTGTACAATCAAGGATATGGAACTAACACTGCAGCACTAAGCACAGCTTTGTTCAACAATGGTTTAAGCTGTGGAGCTTGCTATGAAATGAAGTGTGTTAGTGACTCAAGATGGTGCAAAGCTAGCACCATTGTTGTTACTGCCACAAATTTTTGTCCACCAAATAGTAATGGTGGTTGGTGTAATCCTCCACTGCAACACTTTGATATGGCAGAACCAGCATTTCTTCAAATTGCTCAATATAAAGCTGGAATTGTGCCTATTGCTTTTAGAAGAGTGTCATGTATAAAAAAGGGAGGAATAAGATTCACAATCAATGGTCACTCTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGAGATGCCCATGCAGTGTCAATCAAAGGGTCCAAAACTAGTTGGCAACCAATGTCAAGAAATTGGGGCCAAAATTGGCAGAGCAATTCCTATCTCAATGAACAAAGCCTCTCTTTTAAAGTCACCACTGGTGACGGTAGAATTGTGACAAGCTATAACGTGGCACCAGCTAATTGGCAATTTGGTCAAACCTTTCAAGGGGGTCAGTTTTAG 738 0.4187 MSSTLLVVMFFLFIEMYFHGVTANYVGWQNGHATFYGGGNAAATMGGACGYGNLYNQGYGTNTAALSTALFNNGLSCGACYEMKCVSDSRWCKASTIVVTATNFCPPNSNGGWCNPPLQHFDMAEPAFLQIAQYKAGIVPIAFRRVSCIKKGGIRFTINGHSYFNLVLITNVAGAGDAHAVSIKGSKTSWQPMSRNWGQNWQSNSYLNEQSLSFKVTTGDGRIVTSYNVAPANWQFGQTFQGGQF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01650 245 FunFam Expansin 153 245 - -
Vivi7g01650 245 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vivi7g01650 245 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Vivi7g01650 245 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Vivi7g01650 245 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Vivi7g01650 245 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Vivi7g01650 245 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vivi7g01650 245 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Vivi7g01650 245 Gene3D - 153 245 IPR036749 -
Vivi7g01650 245 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Vivi7g01650 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Vivi7g01650 245 Gene3D - 17 148 IPR036908 -
Vivi7g01650 245 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Vivi7g01650 245 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Vivi7g01650 245 CDD DPBB_EXPA_N 27 148 - -
Vivi7g01650 245 SUPERFAMILY Barwin-like endoglucanases 27 171 IPR036908 -
Vivi7g01650 245 PANTHER EXPANSIN-A15 5 245 IPR002963 GO:0009664
Vivi7g01650 245 SMART dpbb_1 63 143 IPR007112 -
Vivi7g01650 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 153 IPR007112 -
Vivi7g01650 245 Pfam Lytic transglycolase 63 142 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01650 Vivi-Chr7 74116946 74119169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01650 3 245 Expansin Gene Family AT2G40610 75.100 3.47e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01650 - K20628 gmx:100815150 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01650 7 74116946 74119169 Vivi7g01650 7 74116946 74119169 ECH
Vivi7g01650 7 74116946 74119169 Vivi1g05269 1 115318260 115319373 ECH
Vivi3g04787 3 89535612 89537524 Vivi7g01650 7 74116946 74119169 ECH
Vivi3g04787 3 89535612 89537524 Vivi7g01650 7 74116946 74119169 PCT