LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g01590	ATGACGCATATGCTAACCCAAATTTGGAGATGGCTGGTGCAGCCAGAAGTGTGGAGATTTGTAGGCTTTGCCTCAGCTATTGTTGGACTGCTCTGTTATGCTCTAAGCTCTTCCTTCAACTATCTCTTTGGAGATTGGAATCTCTTGAAGATTCTTCTTTACTGCATTTTCAGTTTCTTCATCAGCCTCATGATTTTCTTTGCAAAATTATTACAACACTCCACAAGTCTTCGGTTCAAAGCTCATACAGCATTTCTTGTACTGGCAATCACATCTGCCTATTCCTTTTTCTTCGACAAAAAGGTGAATGGGAAACCAGATCTATGTAGCCTCATTTCATATGCTGCCTTTGCTATCATGTCACTCAGCCTGTCGAGGCAAACTCATTTCGGATTCGAAATCGATCTTCTCTACTTCTTCCTTGGATGTCTAATTGTGCTACTCATGAAGATTAAATTACAGTTATTTTTTGTTGGAGCAGGTTTCAGCTATTCCCTTATTATTCTCCGTTCTTCCTTTTCTTCAATAGATGCTGGAGCAAATAATCCGCACTCTGATCTCCAAAATGGAAATTCGGTGGTTCTTTCTATAGCTTCTCTACAACTCACCAGTACTGATACTGCTAGTGCTACTAGCAGTGCCAATAACAGTAGCATCGGTTCACCACAATTGGTGATCACCGCTGATATTAGTAATATGATGGAACAACTTCAGACATTTGTAACGGAGCTTCGGCGTGAAAATTCAAATTTCATTCAAATGGTGTTGGATTATGTAAAAAAATATGTTGAGGAATACTCTGAATTGGTGGTAACCGATACTAACTTCATGATGGATGCGCTGAAGCCAGAAACCATCAAAGGCCTTGAGGAAACAGCAAAGGTTATGATGAGCTCTGGATTTGAGAAAGATTTTTCCGATGTGTACATCAATTGCCGTAGGGAATGCTTAAATGAGTGCCTAATGCATAGATTGTTCGGGTTACAGAAGCTCAGCATCGAGGACGTTCACAATATGCCATGGAACGTCCTCGAAGCCCAAATTGAGAAATGGATTAAAACTTTCAATATCACTCTGAAGATACTCTTTCCTGGCGAGCGACGAATCTGTGACCGCATTTTTTTCGGATTCCCATCTGCAGCTGATTTTTCCTTCGTGGAGATTTGCAGGGAAACCACCGTTCAGTTGTTGAGTTTTGCTGAATCCGTCGCTTCTGGAAGTCATTCCCCAGACCGTTTGTTTAAAATGCTGGAGGTGTTGGAAACACTGCGTGACTTAATTCCAGAAATTGAGTCGTTCTTTTGTGATGAATACAGTGTGTCTCTAAGGAATGAAGCAAACACCACACGGAAGAAATTGGAAGATGCAATCAGAGACATTTTCATTCAATTGGAGGAATTTTACAGGCAAGAGCATAGGTATCTGGAGTCATTGGAGAGCAATTTAAATGCCAGATCCAAATTCTACGATGGCTCTTTTTCAGGGGATATTTTCTTGATGAACAATGGCACGTACATAATCCCAATTGCAAAAGATAATGAATTAGGATCCCTTTTGGAGAATGATTGGATCCGACAATATGCTTGGAAAGTTTTGCACTACAATGGACAAGATAACATGAGCACTATCTCACCCGAATTAACCCATGAGGTGAATGTGAAAGATTCGGAAGCATTCCCCTGCCAACCGCGAGTAAGACGCAGGAAAACAACTCAGAATATGAGAACATTAGTGATATCTCCTACACAACAGTTTGGAAGCACATATCAAATACTGTATAAAATGCTTATACATCAAGACGGGTTTACATGGAAATTATACGGAACAAAATTGGACTCAAGACGTCATGGGTCGACCCTGGAAGAGGAGATTGGCTTCAAATATCCTTGGAGTATCTACAGGTGTTACCACATGAAGCAACGTGCGTGTCGAGCCAGAAAGAGTATACAACAACTTGGTGAGAATCCAAACGTGTTTGAAATAATATACTATCATGGACATTCCTGCAACAGTCCCTTAATAAGACCAGCATCACAATCAGGCACACCAGCCGAATCCATAAACACTATACATGGAAAAGCTAGCTGGTCCTGCCGACAGTGGGTATCATCCTATGATGGAAAGCGTCGTATGCTATCTTCTTTCTGTCATTAA	2154	0.4095	MTHMLTQIWRWLVQPEVWRFVGFASAIVGLLCYALSSSFNYLFGDWNLLKILLYCIFSFFISLMIFFAKLLQHSTSLRFKAHTAFLVLAITSAYSFFFDKKVNGKPDLCSLISYAAFAIMSLSLSRQTHFGFEIDLLYFFLGCLIVLLMKIKLQLFFVGAGFSYSLIILRSSFSSIDAGANNPHSDLQNGNSVVLSIASLQLTSTDTASATSSANNSSIGSPQLVITADISNMMEQLQTFVTELRRENSNFIQMVLDYVKKYVEEYSELVVTDTNFMMDALKPETIKGLEETAKVMMSSGFEKDFSDVYINCRRECLNECLMHRLFGLQKLSIEDVHNMPWNVLEAQIEKWIKTFNITLKILFPGERRICDRIFFGFPSAADFSFVEICRETTVQLLSFAESVASGSHSPDRLFKMLEVLETLRDLIPEIESFFCDEYSVSLRNEANTTRKKLEDAIRDIFIQLEEFYRQEHRYLESLESNLNARSKFYDGSFSGDIFLMNNGTYIIPIAKDNELGSLLENDWIRQYAWKVLHYNGQDNMSTISPELTHEVNVKDSEAFPCQPRVRRRKTTQNMRTLVISPTQQFGSTYQILYKMLIHQDGFTWKLYGTKLDSRRHGSTLEEEIGFKYPWSIYRCYHMKQRACRARKSIQQLGENPNVFEIIYYHGHSCNSPLIRPASQSGTPAESINTIHGKASWSCRQWVSSYDGKRRMLSSFCH	717

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g01590	717	Gene3D	Exocyst complex component Exo70	223	470	-	-
	Vivi7g01590	717	Gene3D	Exocyst complex component Exo70	471	557	-	-
	Vivi7g01590	717	SMART	WRKY_cls	598	671	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01590	717	SUPERFAMILY	WRKY DNA-binding domain	591	672	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01590	717	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	473	534	IPR004140	GO:0000145\|GO:0006887
	Vivi7g01590	717	ProSiteProfiles	WRKY domain profile.	593	672	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01590	717	Gene3D	WRKY domain	586	673	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01590	717	Pfam	Exo70 exocyst complex subunit	350	471	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vivi7g01590	717	Pfam	Exo70 exocyst complex subunit	475	534	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vivi7g01590	717	SUPERFAMILY	Cullin repeat-like	232	534	IPR016159	-
	Vivi7g01590	717	Pfam	WRKY DNA -binding domain	599	670	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g01590	Vivi-Chr7	73307609	73315833	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g01590	271	535	EXO70 exocyst subunit family	AT5G58430	46.082	3.24e-74	250

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi7g01590		Exo70	1.8e-26	CL0295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g01590	-		-	vvo:131631685	1359.74