LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g01587	ATGGCTGGTGCAGCCAGAAGTGTGGAGATTTGTAGGCTTTGCCTCAGCTATTGTTGGACTGCTCTGTTATGCTCTAAGCTCTTCCTTCAACTATCTCTTTGGAGATTGGAATCTCTTGAAGATTCTTCTTTACTGCATTTTCAGTTTCTTCATCAGCCTCATGATTTTCTTTGCAAAATTATTACAACACTCCACAAGTCTTCGGTTCAAAGCTCATACAGCATTTCTTGTACTGGCAATCACATCTGCCTATTCCTTTTTCTTCGACAAAAAGGTTTCAGCTATTCCCTTATTATTCTCCGTTCTTCCTTTTCTTCAATAGATGCTGGAGCAAATAATCCGCACTCTGATCTCCAAAATGGAAATTCGGTGGTTCTTTCTATAGCTTCTCTACAACTCACCAGTACTGATACTGCTAGTGCTACTAGCAGTGCCAATAACAGTAGCATCGGTTCACCACAATTGGTGATCACCGCTGATATTAGTAATATGATGGAACAACTTCAGACATTTGTAACGGAGCTTCGGCGTGAAAATTCAAATTTCATTCAAATGGTGTTGGATTATGTAAAAAAATATGTTGAGGAATACTCTGAATTGGTGGTAACCGATACTAACTTCATGATGGATGCGCTGAAGCCAGAAACCATCAAAGGCCTTGAGGAAACAGCAAAGGTTATGATGAGCTCTGGATTTGAGAAAGATTTTTCCGATGTGTACATCAATTGCCGTAGGGAATGCTTAAATGAGTGCCTAATGCATAGATTGTTCGGGTTACAGAAGCTCAGCATCGAGGACGTTCACAATATGCCATGGAACGTCCTCGAAGCCCAAATTGAGAAATGGATTAAAACTTTCAATATCACTCTGAAGATACTCTTTCCTGGCGAGCGACGAATCTGTGACCGCATTTTTTTCGGATTCCCATCTGCAGCTGATTTTTCCTTCGTGGAGATTTGCAGGGAAACCACCGTTCAGTTGTTGAGTTTTGCTGAATCCGTCGCTTCTGGAAGTCATTCCCCAGACCGTTTGTTTAAAATGCTGGAGGTGTTGGAAACACTGCGTGACTTAATTCCAGAAATTGAGTCGTTCTTTTGTGATGAATACAGTGTGTCTCTAAGGAATGAAGCAAACACCACACGGAAGAAATTGGAAGATGCAATCAGAGACATTTTCATTCAATTGGAGGAATTTTACAGGCAAGAGCATAGGTATCTGGAGTCATTGGAGAGCAATTTAAATGCCAGATCCAAATTCTACGATGGCTCTTTTTCAGGGGATATTTTCTTGATGAACAATGGCACGTACATAATCCCAATTGCAAAAGATAATGAATTAGGATCCCTTTTGGAGAATGATTGGATCCGACAATATGCTTGGAAAGTTTTGCACTACAATGGACAAGATAACATGAGCACTATCTCACCCGAATTAACCCATGAGGTGAATGTGAAAGATTCGGAAGCATTCCCCTGCCAACCGCGAGTAAGACGCAGGAAAACAACTCAGAATATGAGAACATTAGTGATATCTCCTACACAACAGTTTGGAAGCACATATCAAATACTGTATAAAATGCTTATACATCAAGACGGGTTTACATGGAAATTATACGGAACAAAATTGGACTCAAGACGTCATGGGTCGACCCTGGAAGAGGAGATTGGCTTCAAATATCCTTGGAGTATCTACAGGTGTTACCACATGAAGCAACGTGCGTGTCGAGCCAGAAAGAGTATACAACAACTTGGTGAGAATCCAAACGTGTTTGAAATAATATACTATCATGGACATTCCTGCAACAGTCCCTTAATAAGACCAGCATCACAATCAGGCACACCAGCCGAATCCATAAACACTATACATGGAAAAGCTAGCTGGTCCTGCCGACAGTGGGTATCATCCTATGATGGAAAGCGTCGTATGCTATCTTCTTTCTGTCATTAA	1947	0.4104	MAGAARSVEICRLCLSYCWTALLCSKLFLQLSLWRLESLEDSSLLHFQFLHQPHDFLCKIITTLHKSSVQSSYSISCTGNHICLFLFLRQKGFSYSLIILRSSFSSIDAGANNPHSDLQNGNSVVLSIASLQLTSTDTASATSSANNSSIGSPQLVITADISNMMEQLQTFVTELRRENSNFIQMVLDYVKKYVEEYSELVVTDTNFMMDALKPETIKGLEETAKVMMSSGFEKDFSDVYINCRRECLNECLMHRLFGLQKLSIEDVHNMPWNVLEAQIEKWIKTFNITLKILFPGERRICDRIFFGFPSAADFSFVEICRETTVQLLSFAESVASGSHSPDRLFKMLEVLETLRDLIPEIESFFCDEYSVSLRNEANTTRKKLEDAIRDIFIQLEEFYRQEHRYLESLESNLNARSKFYDGSFSGDIFLMNNGTYIIPIAKDNELGSLLENDWIRQYAWKVLHYNGQDNMSTISPELTHEVNVKDSEAFPCQPRVRRRKTTQNMRTLVISPTQQFGSTYQILYKMLIHQDGFTWKLYGTKLDSRRHGSTLEEEIGFKYPWSIYRCYHMKQRACRARKSIQQLGENPNVFEIIYYHGHSCNSPLIRPASQSGTPAESINTIHGKASWSCRQWVSSYDGKRRMLSSFCH	648

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g01587	648	ProSiteProfiles	WRKY domain profile.	524	603	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01587	648	Pfam	WRKY DNA -binding domain	530	601	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01587	648	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	404	465	IPR004140	GO:0000145\|GO:0006887
	Vivi7g01587	648	Gene3D	Exocyst complex component Exo70	402	480	-	-
	Vivi7g01587	648	Gene3D	Exocyst complex component Exo70	154	401	-	-
	Vivi7g01587	648	SMART	WRKY_cls	529	602	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01587	648	SUPERFAMILY	Cullin repeat-like	163	465	IPR016159	-
	Vivi7g01587	648	Gene3D	WRKY domain	517	604	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi7g01587	648	Pfam	Exo70 exocyst complex subunit	281	402	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vivi7g01587	648	Pfam	Exo70 exocyst complex subunit	406	465	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vivi7g01587	648	SUPERFAMILY	WRKY DNA-binding domain	522	603	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g01587	Vivi-Chr7	73307607	73315833	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g01587	202	466	EXO70 exocyst subunit family	AT5G58430	46.082	5.10e-75	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi7g01587		Exo70	1.4e-26	CL0295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g01587	K07195		-	vvo:131631685	1065.83