Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01562 ATGCTCTCAGGGGACATACCTCCAAATCAAACCATTTACGTTAAGAATCTCAACGAAAAGGTCAAGAAAGATGAGTTGAAGAGATCTCTGTACTGCTTATTCTCTCAATATGGAAGAATATTGGACATCATTGCTCTAAAGACACCTAAGCTTCGAGGACAGGCATGGGTTTGTTTTAGTGAAGTAACTGCTGCCAGTAATGCCGTACGACAGATGCAAAACTTCCCATTTTATGAAAAACCCATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGTTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAAAAAGAGGTACCCTGAGGAATCAAAACCATCTTCTGTGCCAAATGGAACACATGGTGCAAGTAATGGTGGCCCAACAGCCTCATTCCGTCCAGGGTCTAATTCCCAAGAAGCAGCTGCTCCTAACAATATTTTGTTCATAGAGAACTTGCCTTACGAAACCACCGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCCGGGTTTAAGGAAGTGCGCTTGATTGATGCAAAGCCAGGTATCGCATTCGTAGATTTTGAAGATGACATACAATCATCCATGGCAATGCAGGCTCTTCAAGGCTTCAAAATCACACCTCAAAATCCCATGGTTATAAACTTTGCTAAGAAGTAA 699 0.4106 MLSGDIPPNQTIYVKNLNEKVKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKRYPEESKPSSVPNGTHGASNGGPTASFRPGSNSQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIDAKPGIAFVDFEDDIQSSMAMQALQGFKITPQNPMVINFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01562 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Vivi7g01562 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Vivi7g01562 232 Gene3D - 4 114 IPR012677 -
Vivi7g01562 232 MobiDBLite consensus disorder prediction 99 151 - -
Vivi7g01562 232 CDD RRM1_U1A_like 11 88 - -
Vivi7g01562 232 MobiDBLite consensus disorder prediction 99 123 - -
Vivi7g01562 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Vivi7g01562 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Vivi7g01562 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Vivi7g01562 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Vivi7g01562 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Vivi7g01562 232 MobiDBLite consensus disorder prediction 125 151 - -
Vivi7g01562 232 CDD RRM2_U1A_like 156 227 - -
Vivi7g01562 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Vivi7g01562 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Vivi7g01562 232 SUPERFAMILY RNA-binding domain, RBD 8 223 IPR035979 GO:0003676
Vivi7g01562 232 Gene3D - 147 232 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01562 Vivi-Chr7 72675615 72680546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01562 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.034 7.98e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01562 K11094 - gmx:100805822 416.772