Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01496 ATGGCGACGAGCATGCTAGGGTTGTCTTCTTTCCCTTGCTACACAGCACCAACCCGTTCTCTTCCAAATCTTCGTATCTTATCTATTCGACAGGAATTTCCCCTTGCAAGCAAAATCGTTGTTAAAAATTTACCTTATTTTACTGGTGAGAATACTTTGCACAAGGAATTTTCTAATTTTGGCAAGATAGCTGAAGTTAAAATGGTTAAAGATGCGGTCAGAGAAAGATCGAAGGGACTTGCTTTTATTCAATACACAAATCAAGACGAAGCGTTGCTTGCACTAGAAAACATGGATCAAAAGAATTTTTACGGCCGGACAATCTCTGTGAACCTTGCAAAACTTAATCCTTATGATATGTGTGAACCCCCACCAAGGGCCTCAGGGCCACCAAAGGAGTGTAATTTAACGGAACCAAGGGACTCGGAGCCACCAAAGAAGTGTAATTTACCGGAACCAAGGAAGTGGAATTTACCTGAAGAGCATGTAGAAGTTGCAGATTGCTGGTACTGA 513 0.4172 MATSMLGLSSFPCYTAPTRSLPNLRILSIRQEFPLASKIVVKNLPYFTGENTLHKEFSNFGKIAEVKMVKDAVRERSKGLAFIQYTNQDEALLALENMDQKNFYGRTISVNLAKLNPYDMCEPPPRASGPPKECNLTEPRDSEPPKKCNLPEPRKWNLPEEHVEVADCWY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01496 170 SUPERFAMILY RNA-binding domain, RBD 21 124 IPR035979 GO:0003676
Vivi7g01496 170 SMART rrm1_1 38 111 IPR000504 GO:0003723
Vivi7g01496 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 108 IPR000504 GO:0003723
Vivi7g01496 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Vivi7g01496 170 PANTHER GEO13361P1-RELATED 37 118 - -
Vivi7g01496 170 MobiDBLite consensus disorder prediction 123 149 - -
Vivi7g01496 170 Gene3D - 28 147 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01496 2 99 Eukaryotic Initiation Factors Gene Family AT4G34110 33.673 7.25e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01496 - - psat:127118516 287.345