Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01428 ATGAAGTGGGAAATGGAAATCCTGACTCCTACATCATACACTCCAAATTCCAATTGGTGCATGGAAGAAACCAGAACCACAAACTGGACTCATGAAGAGAACAAGCTATTCGAAAATGCTCTTGCAATTTACGACAAAGATACTCCAGATCGGTGGCATAAAGTCGCGGAAATGATACCCGGGAAAACAGCTGGTGATGTTATGAAACAGTACAAGGAATTGGAGGATGATGTTTGTAACATAGAAGCTGGTTTGATACCAGTTCCTGGTTATAGTACTCCTACTTCACCTTTTACCTTAGATTGGGTGAGTAGTTCGGGTTATGATGTTTCGAAAGGAAATGGAAAGAGATCTTCTTTAGTTAGAGGTTCTGAGCATGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAAATTATTTCTACTTGGTCTAAAGAAATATGGCAAGGGTGATTGGAGAAATATTTCGCGCAATTTCGTTGTCACTAGGACTCCAACTCAAGTGGCAAGCCATGCTCAGAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGGGCTAGCATTCATGACATAACAACGGTTAATCTCAGCGAAAAAATTGGATCTTGTTCTTCGGAAGACACCAACGATAGGTCCACTTCGCCGCAGAGTTCCATGTTACTCTCCCACCAACAACATCAACAGCAATCAAGTTCTAGTACAAATTTTCTTTGGAGGAATGATCAGCAAAATGCAATGGTTTTCAATCCAGCTCTTGAACAAGTCTTCATGCCTCCTCATGGTGTTAACTCCTATGAGATCAAAATGGAAGAGGGTTTCGTTCATGAGTCTTCTTATCCACATAACATGGTTTTCCAAATGCAACATCCATCTCAACATTATTCACATGCATAA 909 0.4059 MKWEMEILTPTSYTPNSNWCMEETRTTNWTHEENKLFENALAIYDKDTPDRWHKVAEMIPGKTAGDVMKQYKELEDDVCNIEAGLIPVPGYSTPTSPFTLDWVSSSGYDVSKGNGKRSSLVRGSEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSEKIGSCSSEDTNDRSTSPQSSMLLSHQQHQQQSSSSTNFLWRNDQQNAMVFNPALEQVFMPPHGVNSYEIKMEEGFVHESSYPHNMVFQMQHPSQHYSHA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01428 302 CDD SANT 133 178 IPR001005 -
Vivi7g01428 302 FunFam Transcription factor SRM1 21 88 - -
Vivi7g01428 302 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Vivi7g01428 302 SMART sant 130 180 IPR001005 -
Vivi7g01428 302 SMART sant 25 77 IPR001005 -
Vivi7g01428 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Vivi7g01428 302 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Vivi7g01428 302 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 256 IPR043363 -
Vivi7g01428 302 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Vivi7g01428 302 CDD SANT 28 74 IPR001005 -
Vivi7g01428 302 Gene3D - 132 182 - -
Vivi7g01428 302 MobiDBLite consensus disorder prediction 206 238 - -
Vivi7g01428 302 SUPERFAMILY Homeodomain-like 128 181 IPR009057 -
Vivi7g01428 302 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Vivi7g01428 302 FunFam transcription factor MYB1R1 132 183 - -
Vivi7g01428 302 Gene3D - 21 88 - -
Vivi7g01428 302 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Vivi7g01428 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Vivi7g01428 302 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Vivi7g01428 302 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01428 Vivi-Chr7 69984780 69987157 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g01428 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01428 - - gmx:778034 390.193