Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01416 ATGGGTTCTTTATGTGATTTTTGTGGAGACCAGAGGTCCTTGGTGTACTGCCGCTCTGACGCTGCTTCCTTATGTTTGTCATGCGATCGGAATGTTCATTCCGCTAACGCACTTTCTAAGCGTCATTCAAGAACACTCGTATGCGAGAAGTGTAATTCACAACCTGCATATGTGAGGTGCGTTGAAGAGAAAGCTTCCTTTTGTCAGAACTGTGATTGGTCGGCTCACGGTACCGATCCGTCTTCTTCAACTCACAAAAGACAATCAATCAATTGCTACTCTGGCTGTCCTTCCGCTTCCGAGCTTTCTTCTATATGGCCCTTTTTCTCGGATATACCTTCTGTGGGGGAAGTGTGTGAGCAGGAACTCGGTTTGATGAGCATTAATGAGAACAGCAATAATAAAGCTTCGGTTCCTCCAGAAAGCAAGAATGTATCTGGCTCAGCTCAAGTTGTTGCCGATCTTCCCAACAAGGATAAGTCTAGGGCCGGCACATCTTCAATAGCCGAATCAAGTGCAGAACCTTGTATCATTGACCAGCCGCCCGGACCGTCCAATGAATGTATGCCCAAGTTACAACATCCCGGTAGTATGGCATCTGCACTTTGTGAAGATGATAATTTGTTCGACGATTTCAACATAGATGATATGGATCTTGAACTTGAGAACTATAAGGAAGTTTTCTCTTTCACTCTCAATAACTCTGAAGAGTTTTTCGAAAAGGGAGGTATTGATAGCTTATTTGAGAGAAAAGATGTGTCTGCTATTCCAGCATCTTCAGATTCAATGTTAAGTACTAAAACTGAACCGATTCTTTACTATTCGGAAACACAATCCCATTCAAACGTTTCATTTTCCGGCGTTATCAACAGTGCTAGTGCTGGTGACAATCAAGAGTGCGGCGGTGCTTCTTCAAAGCCTCTCACGGGGGAGCCTCCCTGGTGTCCTCCTTGCCCCGAAAGTTCTATTCAATCTGCTAACCGCAGCAACGCTGTCTTGCGCTACAAGGAGAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGGTATGCTTCTCGGAAGGCTAGAGCTGATGTCAGAAAACGTGTGAAGGGCCGATTCGTTAAAGCTGGTGAAACATTCGACTATGACCCTTTAAGCAAAACCAGAAGCTTCTGA 1158 0.4439 MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCEKCNSQPAYVRCVEEKASFCQNCDWSAHGTDPSSSTHKRQSINCYSGCPSASELSSIWPFFSDIPSVGEVCEQELGLMSINENSNNKASVPPESKNVSGSAQVVADLPNKDKSRAGTSSIAESSAEPCIIDQPPGPSNECMPKLQHPGSMASALCEDDNLFDDFNIDDMDLELENYKEVFSFTLNNSEEFFEKGGIDSLFERKDVSAIPASSDSMLSTKTEPILYYSETQSHSNVSFSGVINSASAGDNQECGGASSKPLTGEPPWCPPCPESSIQSANRSNAVLRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETFDYDPLSKTRSF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01416 385 MobiDBLite consensus disorder prediction 130 149 - -
Vivi7g01416 385 SMART bboxneu5 48 90 IPR000315 GO:0008270
Vivi7g01416 385 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vivi7g01416 385 MobiDBLite consensus disorder prediction 296 322 - -
Vivi7g01416 385 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi7g01416 385 CDD Bbox1_BBX-like 47 90 - -
Vivi7g01416 385 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Vivi7g01416 385 Pfam CCT motif 328 370 IPR010402 GO:0005515
Vivi7g01416 385 MobiDBLite consensus disorder prediction 157 176 - -
Vivi7g01416 385 CDD Bbox1_BBX-like 4 47 - -
Vivi7g01416 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 373 - -
Vivi7g01416 385 ProSiteProfiles CCT domain profile. 328 370 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01416 Vivi-Chr7 69694495 69698482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01416 1 385 C2C2-CO-like Transcription Factor Family AT3G07650 52.956 4.49e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi7g01416 CCT 1.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01416 - - vvo:131620713 741.495