Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01409 ATGGGAGAGCGAGAGAGGGTAATGGAAGTGGTGGAACAACAACAACAACAACCGGAAGAACAAGAACAAGAACCAGAAACAAGCGAAACATCATCGTCAACATCATCAACAACAACATGGAAACAAAACCTGACAATGCAGTTATTATCCGACAAACTAACCAACGGAAACCTTAACTCTAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGGTTCGTAAATCTTCCAAAACAAGGTCCAAATTCGCCGCTGTTGGGGTCATTCAACCGCTTATTTTTATGTTATCTTCTTCCAATCTTGATGCTCGTCAGTCTTCTCTGCTTGCTCTTCTCAACCTTGCTGTTCGGAATGAAAGAAACAAGGTTCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTGGAGCTTCTCAAGATGCAAAATAACGGTATACGAGAATTGGCTACAGCCGCAATCTTGACACTCTCGTCTGCTGCATCCAACAAGTCGATTATTGCTGCTTCCGGAGCTGCTCCTCTCCTTGTTCAGATTCTCAAATCCGGAAGTGTTCAAAGCAAAGTTGATTCTGTTACAACCCTCCATAATCTCTCCATCAGTATCGAAAATTCCATCGAACTTCTCGACGCTAGTGCCGTTTCCCCTCTTATCAACCTCCTTAAAGACTGTAAAAAGTATTCAAAGTTTGCAGAAAAAGCATCATCACTACTTGAAATCCTTTCCAATTCTGAAGAAGGACGAACCGCAATCTCACTTGCACACGGTGGAATTTTAACCATTGTAGAGACAGTCGAAGACGGATCACTTGTCAGCACAGAGCACGCCGTTGGAGCATTGCTATCATTATGTCTAAGCAACCGGGATAAATATCGGGAACTAATTCTTAGAGAAGGAGCAATTCCAGGCCTGTTACGGCTAACAGTAGAGGGCACAGTCAAAGCTCAAGATAAAGCACGCACACTTCTAGATTTGCTTCGAGATTCTCCTGAAGAAAAAAGACTAGACACGTCGGTTTTGGAGAAAATTGTTTACGACATTGCTGAACGGCTAGATAGAGTAGATAAAGCTGGTGAAACATCCAAATGA 1083 0.4294 MGERERVMEVVEQQQQQPEEQEQEPETSETSSSTSSTTTWKQNLTMQLLSDKLTNGNLNSKIEAAREIRRMVRKSSKTRSKFAAVGVIQPLIFMLSSSNLDARQSSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKMQNNGIRELATAAILTLSSAASNKSIIAASGAAPLLVQILKSGSVQSKVDSVTTLHNLSISIENSIELLDASAVSPLINLLKDCKKYSKFAEKASSLLEILSNSEEGRTAISLAHGGILTIVETVEDGSLVSTEHAVGALLSLCLSNRDKYRELILREGAIPGLLRLTVEGTVKAQDKARTLLDLLRDSPEEKRLDTSVLEKIVYDIAERLDRVDKAGETSK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01409 360 FunFam U-box domain-containing protein 4 24 360 - -
Vivi7g01409 360 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 254 IPR000225 GO:0005515
Vivi7g01409 360 MobiDBLite consensus disorder prediction 11 41 - -
Vivi7g01409 360 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 86 128 IPR000225 GO:0005515
Vivi7g01409 360 SMART arm_5 75 115 IPR000225 GO:0005515
Vivi7g01409 360 SMART arm_5 199 241 IPR000225 GO:0005515
Vivi7g01409 360 SMART arm_5 116 157 IPR000225 GO:0005515
Vivi7g01409 360 SMART arm_5 242 283 IPR000225 GO:0005515
Vivi7g01409 360 SMART arm_5 158 198 IPR000225 GO:0005515
Vivi7g01409 360 Gene3D - 164 350 IPR011989 -
Vivi7g01409 360 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 128 170 IPR000225 GO:0005515
Vivi7g01409 360 PANTHER U BOX DOMAIN-CONTAINING 36 325 - -
Vivi7g01409 360 Pfam Armadillo/beta-catenin-like repeat 117 156 IPR000225 GO:0005515
Vivi7g01409 360 SUPERFAMILY ARM repeat 46 330 IPR016024 -
Vivi7g01409 360 MobiDBLite consensus disorder prediction 1 41 - -
Vivi7g01409 360 Gene3D - 43 163 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01409 Vivi-Chr7 69606498 69609678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01409 45 326 U-box Gene Family AT3G54790 38.516 9.84e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01409 K08332 - gmx:100782472 480.715