Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01370 ATGGAAACTTTGGATGCTAATTCATCATCATCATCGTTGTCACCATCATCAATATCATCGTCTTTTAATAGTGATGATAACAATGGTAGTGTAACTTGGTATGGGATGAGGTTACCTTCTGTTAACCCCTTTTTGTCACCACTTACATTTCTATTGGATTATTCTGGGGTTCTGCGTGCTAATAATGATTCCGAGGCTGTGATTGTTAATAATGGAGTTTCTGGTTCTGGTTTGGGTTCGGAATTAAGGTCTCGTGTTGATACTGATTCTGCGGCTTCGGTTGCTGGGAGTAGTGCAGGGGAAGTTGCAATAAGGATTATTGGAGCTGGAGAGAGTGTTCAAAATCAGGTTGGAGAGTTGGGTTATGATGATTGTGGGGAGGATTTGATTGGTGAGAGAAGTGGAGTTTCTGCATTGGATGGTGGTGATGGTGTGGGGAGTCGTGGGGGGATTGAGGCTAGTGAGGGGGTTCCTCTTGTGTCTTCTTCATCTTCGTCGTCGTTGGCTGGAAGTGGACGGGTTGATGGTGATGCTTCTGTGAATGGATCGGAAAATAATAGCAGAGATTCGTCTTCTTACCAGAGATATGATATTCAGCTTGTTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTATTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACGATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGACAGGAAAGTTTCTTTGCTTGCTGGCATCTCTGTTGCTTTCATTCTTCATGTGATAGGCATATACTGGTGGTATCGAAATGATGATATTTTATATCCATTGGTTATGTTACCTCCAAACCCAACACCTTTTTGGCATGCAATATTCACCATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTCAAGTGTATTCTGCTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAACTGTTGACTCTTGTTGAGTACACACTGCTGTTGTATCGTGCCTTGTTGCCTACTCCAGTTTGGTACCGGTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCATCACTGACCACGGGATTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAAAGCTTCATTTCTGCCTTGAAAGCGTTATCAAGAAAGGAAGTTCATTATGGGGTTTATGCCACAGCGGAACAGGTTACTGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCACCTATCTTATTACGTTGCAAACACATTTTCTGCGAAGATTGTGTATCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCTCTCTGCAGAGCATTGGTTAAAGCAGCTGATCTCCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTTCCAGCTGTTTTAA 1461 0.423 METLDANSSSSSLSPSSISSSFNSDDNNGSVTWYGMRLPSVNPFLSPLTFLLDYSGVLRANNDSEAVIVNNGVSGSGLGSELRSRVDTDSAASVAGSSAGEVAIRIIGAGESVQNQVGELGYDDCGEDLIGERSGVSALDGGDGVGSRGGIEASEGVPLVSSSSSSSLAGSGRVDGDASVNGSENNSRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISVAFILHVIGIYWWYRNDDILYPLVMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQLLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQSFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01370 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
Vivi7g01370 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Vivi7g01370 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 467 - -
Vivi7g01370 486 SMART ring_2 425 462 IPR001841 -
Vivi7g01370 486 MobiDBLite consensus disorder prediction 157 190 - -
Vivi7g01370 486 CDD RING-HC_RNFT1-like 423 463 - -
Vivi7g01370 486 SUPERFAMILY RING/U-box 418 467 - -
Vivi7g01370 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 473 IPR013083 -
Vivi7g01370 486 MobiDBLite consensus disorder prediction 1 23 - -
Vivi7g01370 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 25 486 IPR044235 GO:0061630|GO:1904294
Vivi7g01370 486 MobiDBLite consensus disorder prediction 153 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01370 Vivi-Chr7 68926851 68932143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01370 14 486 C3H Transcription Factor Family AT5G01960 60.460 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01370 - K22379 qsa:O6P43_020068 622.854