Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01364 ATGGGTAGGCGAAAAAATAAACCAAGTCGATCAGGTGGGATAATAGTAGAAACAAATGCTACTGCGGAAACAGAATTGGATAAACATAATGGTATAGAAGCAGGAAAAGTAGAAAAAAGTGATTTTGGTGATATTGATAAACCTTATTTTGTTGAAGTTGACCGCTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTCTCAAGGATTTAAATTTAAGAGAAGGTTTTAATGGTTTTGAATTGTTTGAAGATTATTCTCAGGATCCCCAATTCTCGTTAAGATTAAGGTTATGTAATGTCGGTAATGTTCTTCGTCGAATCAAACTTGGCCATTGGCCTGTATTACCCTACACTGATATTCATTTAGAGTTTGTTAAAAAAGCTACAGCTGACAATGATGAAACATGCATTGTGATGTTATCGGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCATTTGACGAGTTTGAAATTTGTTACATTGAGGGTGGTTCCTGGGATTAGGCTTTCTGATGACATACCTTCCCTCAGGGTGCGGGTTGAGGTACTAAAGAGTGCCTTCAATGCATGTGAGTCGCTTCTCGAGAGTTCTAGACAGCTATGGAAAAAGAGCATGATGAATGTCATGTCTTGGTTACGACCAGAAATAATGACTTCAGAGGTTAGGTATGGGTTAAGTAGCTCTATGGAAATGGAAGTTGATTTGCAGACAGAAATGGCAGACAATGATGGGTATGTCGGGAAATGCTCGATGTTTAATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCTGAGTTACTTCCTGAACTTCGGCCATATCAACGACGTGCAGTTTTTTGGATGGTAAAACGAGAAAAAGCAATGGAAGAAAGTCAGATTGAAAGAGAAAGGAATCAGTTTCATTCTCCATTATGTGTGGCGGTTGATTTTCTAGACACAAGCTCGAAAATGTTTTTCAATCCTTTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCTTCACCTTATGTATTCGGAGGCATTCTTGCTGATGAGATGGGATTAGGAAAAACTGTAGAATTGCTTGCCTGCATCTTTGCTCACCGAAGATCAGCAAATGGAAGTGACACACTAATTGATTCAGTTCCCCAAGTCAATGGCAACGAAAAAGTCTCTTTAAAAAGACTCAAAAGAGATCGCGTGGAGTGCATATGTGGAGCTGTCAGCGAAAGTCTCCAATATGAAGGACTATGGGTTCAGTGTGACACTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCGCCTAAAGGAAAGTCAGTGAAATCAAAACAAGGATTGGAAAGCAAAACACATAAAACTACTATAGTTTTGAGGAATGGGAAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCTACACTCATTGTTTGCCCAGCTCCTATTTTGCCCCAGTGGCACGATGAAATTATTCGTCATACGCGTCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTGCGTAACACATCTTTCTCCAATTCATCTTTGATGGATGTCGGTGATCTTGCGAGTGCGGACATTGTAATCACTACATATGATGTGCTTAAAGATGATTTGGCCCATGACTCTGATAGACATATAGGTGATCGACACCTTTTAAGATTTCAGAAAAGATACCCAGTTGTCCCAACTCTTCTTACCAGAATATACTGGTGGAGAATTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGTTACCGCTGCAACTGAAATGGCTCTAAGACTCCATTCCAAGCATCGTTGGTGCGTTACAGGAACCCCGATTCAGAGAACGTTTGATGACTTATATGGACTTTTAAGGTTCACTAAAACTAGTCCTTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGTGAAGGGAGATATGGGAGCTATTGAATTTACACATAGACTTTTCAAACAAATCATGTGGCGTTCTTGTAAACAACATGTCGCAGATGAACTGGAACTTCCCTCTCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTCGAAGAGCACTTTTACCAGACGCAACATGAAGCTTTTGTTAGAGATTCTCATGAATTTATCGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTATCTTTGAATGGTTCGTCTGATTCTTATATCACTGAATCGGAGTCAAGGAAGCTATTTGATGCTTTACTGAAGCTTCGTCAGGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGATCCCTGCAGCAGTCTCCTATGACAATGGGGGAAGTACTAATGGTCCTTATAAGCAAGACCAAGGTAGAAGGCGAGGAAGCTCTCAGGAGGTTAGTTATGGCTCTGAATGCACTTGCAGCAATCATTACAATACAAAAAGATTTTTCTCAAGCTGCTTTGCTGTATAATGAAGCTCTTACTTTAGCTGAAGAGCATTTTGAAGATTTCCGCCTTGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTAATATATTACCGCTGGCTGAGAATTTTTCTTTGAAATTGCCATCCAAGCGAAAGCAAATATCTGGAACTTCTGCAGTTAATACAACCAAAAAGCATTCTATTGCAAAGGTTGTTCATGATCATGTGAAGAGGCACAAAATAAGTAACTGCGAGAACATAAATTTAACAGTGGCTTCTGCAGAACCATCAAATGTTGCATCTAGCCTTTCAGAAAATGATTTAAATGATAGAGAATTTGACGATTTGTCTGCAAGTTCCGTTAAATATTTGATAGCTGAGTGTGAAGATTTAAAACTAAAATACTTACTGGTGTTCAGTTCAAAGCTAACTGCAGCTCAACAGGAGTTTGAAAGTTCTTACATGCAGGTTTGTAACTTATATCGTGACACTAGAAAAAATCAAAATACACTTTGGTGGTTAGAAGCACTTCATAATGCTGAGCAGAACAAGGATTTCTCATCCGAGTTGCTTAGAAAGATTGAAGAAGCCATGTCAGGAAATCCAAAATCGTCACGAGTAGCTCCTCGTTTTCGGAGCATAAGCTCTCTGAAGTATCAAATTCAAACCAGTTTGGATCAGTTAGAAGCCTCCAGGAAATTGCTATTAGATCGTTTGTTAGAGATTGATCAGACAATGGAAAAACCAAATGATGAAGATATTGAACGCATTGGTAAATGTCGAAATTGTCAACCTAATTGTGATGGCCCCCCATGCGTTCTGTGTGAACTAGATGAATTGTTTCAGGACTATGAAGCTAGACTATTTGTTCTCAAGGACGAACGTGGTGGGATAATTTCATCTGCGGAGGAGGCAGTAGGTTTTAAAAAGAAAATTTTTGCACGCAATCATTTCCTTGCAAATCTATCAAAGTCTAATCACAGTTCAACAGTACCTGATGATGATTATGATGAGTCCAGAAAAAGGAATGCTGGACAGAGAGTTATAACTTCGAGATCGGAATCTATGCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCAGTTTGGAAAGGACAGTGTCTCAGCAGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTTTGCTTATGCAAGGTCTTTGGCATCAGCTCAAGCTCAATATCTGCGAGCCCATGATGAAATAAAGATGGCGGTTTCTCGTTTACACCTAAGGGCAAACGAAGATGATAAATCTCTTGATGCTCTTGGTGAAAATGAATTATATGCGGCTAGCTCAAACTTTTCCCAGGAGAAGTTTATGTCATTGGCCTTGTTGTCACAAATAAAGGGAAAGCTACGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAGCTGTCATTAGAAAGTCCAGATAACTCTTCATGCACTCAAGACACAAATGCTATGTCAAGTTCTACAGAAGAGAGGGTTGAACTCATATCTAAAACTAATGAGGAAACATGTCCAATTTGCCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATGTTACTTGCTGTAAATGTTTATTTGCTATGACTGAGAAGAGGCTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGCCGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAAGGAATCTCCCAATTCATCAATGCCGCATACAACTGACAGCTGTGAAAAACACGAAGCATCTATTCCTGTTAAGGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATAAAGGCTACAAATCATAAGTCAAAAGTTCTTGTATTTTCAAGTTGGGAAGATGTACTTAATGTATTGGAACATGCCTTTGCCGCCAATAACATTTCCTTCATCCGGATGAACGGAGGCAGGAAAGCTCACCCCGCCATCAGTCAATTTAGGGGAAAACAGAATGACTCAAAAGGATGTGAGGGGTCTGAACCAAAATCAATTCAGGTGTTATTGCTATTAATAAAACATGGAGCCAACGGTCTCAATCTTTTGGAAGCACAACATGTTGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGCCAAAAAAATAAGACCCTCATTCATCATTTCTTAGTAAAAGACACAGTCGAAGAGAGCATATATAAGTTGAACAGAAGCAGAAGCAATCATTCATTCATCAGTGGCAACACAAAAAATCAAGATCAGCCTGTTTGGACCCTTAAGGATGTGGAATCCTTGGTGGCTAGAGCACCTCTAATGGCTCCGGAAACCGATGAAAATCCTAATACAAATACAAACCTGAGAGACTTTCCGGCATCAGTTGCGGCGGCTATAGCTGCTGAAAGAAGATATAATGAGCAAAGAACATGA 5007 0.398 MGRRKNKPSRSGGIIVETNATAETELDKHNGIEAGKVEKSDFGDIDKPYFVEVDRSGWLSDEHLDISEVVLKDLNLREGFNGFELFEDYSQDPQFSLRLRLCNVGNVLRRIKLGHWPVLPYTDIHLEFVKKATADNDETCIVMLSGIFDGPDEGVSGLVHLTSLKFVTLRVVPGIRLSDDIPSLRVRVEVLKSAFNACESLLESSRQLWKKSMMNVMSWLRPEIMTSEVRYGLSSSMEMEVDLQTEMADNDGYVGKCSMFNPAGFYEAIKPSKAEPMLEDDIPELLPELRPYQRRAVFWMVKREKAMEESQIERERNQFHSPLCVAVDFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSANGSDTLIDSVPQVNGNEKVSLKRLKRDRVECICGAVSESLQYEGLWVQCDTCDAWQHADCVGYSPKGKSVKSKQGLESKTHKTTIVLRNGKYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGVRNTSFSNSSLMDVGDLASADIVITTYDVLKDDLAHDSDRHIGDRHLLRFQKRYPVVPTLLTRIYWWRICLDEAQMVESTVVTAATEMALRLHSKHRWCVTGTPIQRTFDDLYGLLRFTKTSPFNIYRWWSEVIRDPYVKGDMGAIEFTHRLFKQIMWRSCKQHVADELELPSQEECLSWLTLSPVEEHFYQTQHEAFVRDSHEFIESLRNDILNRKVPDSVSLNGSSDSYITESESRKLFDALLKLRQACCHPQVGSSGLRSLQQSPMTMGEVLMVLISKTKVEGEEALRRLVMALNALAAIITIQKDFSQAALLYNEALTLAEEHFEDFRLDPLLNIHIHHNLANILPLAENFSLKLPSKRKQISGTSAVNTTKKHSIAKVVHDHVKRHKISNCENINLTVASAEPSNVASSLSENDLNDREFDDLSASSVKYLIAECEDLKLKYLLVFSSKLTAAQQEFESSYMQVCNLYRDTRKNQNTLWWLEALHNAEQNKDFSSELLRKIEEAMSGNPKSSRVAPRFRSISSLKYQIQTSLDQLEASRKLLLDRLLEIDQTMEKPNDEDIERIGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKDERGGIISSAEEAVGFKKKIFARNHFLANLSKSNHSSTVPDDDYDESRKRNAGQRVITSRSESMLEVLLGVIKNYCKTQFGKDSVSAATKHLHIFEGMRKEFAYARSLASAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELYAASSNFSQEKFMSLALLSQIKGKLRYLKGLVQSKQKLSLESPDNSSCTQDTNAMSSSTEERVELISKTNEETCPICQEKLGHQRMVFQCGHVTCCKCLFAMTEKRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQKESPNSSMPHTTDSCEKHEASIPVKGSYGTKIEAVTRRILWIKATNHKSKVLVFSSWEDVLNVLEHAFAANNISFIRMNGGRKAHPAISQFRGKQNDSKGCEGSEPKSIQVLLLLIKHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHHFLVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVWTLKDVESLVARAPLMAPETDENPNTNTNLRDFPASVAAAIAAERRYNEQRT 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01364 1668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1623 IPR001650 -
Vivi7g01364 1668 Gene3D - 467 710 IPR038718 -
Vivi7g01364 1668 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Vivi7g01364 1668 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Vivi7g01364 1668 Gene3D - 345 412 IPR038718 -
Vivi7g01364 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 687 IPR027417 -
Vivi7g01364 1668 CDD SF2_C_SNF 1446 1583 - -
Vivi7g01364 1668 CDD DEXQc_SHPRH 289 689 - -
Vivi7g01364 1668 Pfam SNF2-related domain 292 785 IPR000330 GO:0005524|GO:0140658
Vivi7g01364 1668 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 49 1667 - -
Vivi7g01364 1668 Coils Coil 1018 1038 - -
Vivi7g01364 1668 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Vivi7g01364 1668 Pfam PHD-finger 415 483 IPR019787 -
Vivi7g01364 1668 Pfam Helicase conserved C-terminal domain 1451 1572 IPR001650 -
Vivi7g01364 1668 SMART helicmild6 1480 1572 IPR001650 -
Vivi7g01364 1668 SMART ring_2 1355 1402 IPR001841 -
Vivi7g01364 1668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 458 IPR013083 -
Vivi7g01364 1668 SMART PHD_3 414 482 IPR001965 -
Vivi7g01364 1668 MobiDBLite consensus disorder prediction 1171 1186 - -
Vivi7g01364 1668 MobiDBLite consensus disorder prediction 1165 1186 - -
Vivi7g01364 1668 SMART ultradead3 285 658 IPR014001 -
Vivi7g01364 1668 Gene3D - 1424 1638 IPR027417 -
Vivi7g01364 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1611 IPR027417 -
Vivi7g01364 1668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1338 1422 IPR013083 -
Vivi7g01364 1668 SUPERFAMILY RING/U-box 1349 1407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01364 Vivi-Chr7 68473873 68489412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01364 285 783 RAD5 or RAD16-like Gene Family AT5G22750 26.931 2.37e-40 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi7g01364 SNF2_N 1.1e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01364 K15710 - gmx:100776659 2650.54