Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01347 ATGTCCTCACAAGCAGTGCAGTTGTATATAGAGAAAAATCATGTGGTTATGGATAATGGTATACTAAAAGTGTATTTCTCAAATCCTGGGGGGTTTGTGACTAGAATACAATATAATGGCATTGATAATTTGCTTGAAGAACTTAATGATGCAAATAATAGAGGGTATTGGGATGTTGTTTGGAGTGAAGCTGGAACTACAGGAACACTTGGAACATTTGAAAGGGTTGTTGGAACAAATTATAATGTTATAATGGAAACAGATGAACAAGTTGAAATCTCATTTAGTAGAATATGGGATCCATCTCTTAAAGGAAAACAATCACCTTTAAATATAGACAAAAGGTATGTGATGCTACGTAATTCATCAGGATTCTACTCTTATGCTATCTTTGAGCACTTAAAAGAGTGGCCAGCTTTCAACATACCTCAAATAAGAATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTACATGGCTGTGGGGGATGATAGACAAAGGCTTATGCCTCTACCTGATGATCGATTACCTGGAAGAGGAGAAGAACTTGTTCCTCCAGAAGCTGTTTTACTTGTTAATCCTGTGGAGCCAGAGTTCAAAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAAAATATAGACCTTAAGGTCCATGGATGGATAAGTTCAAAAGCCGAAACAAATCAAGCAATAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGATCTGGTGGCCTTGTCAAACAAAATCTTACCTCTCATGTTGGCCCTATCAGTCTTGCAATGTTTCTTAGTGCTCATTATGCAGGAGAGGGTATAGTTCTTAAACTCCAACCCAATGAGCCATGGAAAAAAGTTTTTGGGCCAACTTTTGTCTATCTTAATACCTTTTTAGATCATCATAAGGATTCACTAGAGCTTTGGGAGGATGCCAAATATCAGATGAACAAGGAAGTTCAAAGTTGGCCCTATGATTTTCCATCTTCAATTGATTTTCAAAAATCTAGCGAACGAGGAGCTGTTAATGGCACCCTACTAGTTCGTGATAGGTTTGTAAGTGATAAGGACATAATAGCACAAGGTGCATACATAGGTTTGGCACCGCCGGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGTGTAGAGCAAACGAGGATGGATACTTTTCAATAAAAAATATACGAAGTGGGAATTATAATCTATATGCATGGGTTCCTGGTTTCATTGGAGAGTATTGGAACAAAATTATCATCAAAATAACCCCAGATTGTAAAATAAACTTTGGTGACATTATTTACGAGCCACCAAGAAATGGTCCAACATTATGGGAGATTGGAATCCCTGATCGCTCCGCAACTGAGTTCTATATTCCAGATCCTAATCCAAAATTCATAAACAAGCTTTTTATAGGTCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAGTTATATCCAAATGAAGATTTAATTTATACTGTTGGTGTTAGTAACTACAGAAAAGATTGGTTTTATGCACAGGTCACAAGGAAGAAAAATGATGGTAGTTATCAAGGAACTACATGGCAAATTAAGTTTAACCTAGATGACGTGGAAGTAAATGGAATATATAAATTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAGTTACAAGTTCGAGTGAACAATGTTAAACAAGATCCTCCAATATTTACTACAGGAATGATTGGAAAGGATTACGCAATAGGAAGACATGGCATTCATGGACTTTATTGGCTATTTAACATTGATGTTCCAAGTCTTTTGTTATCCAAAGGAGATAATACTATTTTCCTAACACAGACTATGGCTTTTGGTCCTTTGGCCCGATTTCAAGGAATAATGTATGACTATATTCGTTTAGAAGGTCCTAACTCTGGTTCTTAA 1941 0.3704 MSSQAVQLYIEKNHVVMDNGILKVYFSNPGGFVTRIQYNGIDNLLEELNDANNRGYWDVVWSEAGTTGTLGTFERVVGTNYNVIMETDEQVEISFSRIWDPSLKGKQSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAVGDDRQRLMPLPDDRLPGRGEELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENIDLKVHGWISSKAETNQAIGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEGIVLKLQPNEPWKKVFGPTFVYLNTFLDHHKDSLELWEDAKYQMNKEVQSWPYDFPSSIDFQKSSERGAVNGTLLVRDRFVSDKDIIAQGAYIGLAPPGDVGSWQRECKGYQFWCRANEDGYFSIKNIRSGNYNLYAWVPGFIGEYWNKIIIKITPDCKINFGDIIYEPPRNGPTLWEIGIPDRSATEFYIPDPNPKFINKLFIGHPDKFRQYGLWERYAELYPNEDLIYTVGVSNYRKDWFYAQVTRKKNDGSYQGTTWQIKFNLDDVEVNGIYKLRLALASANVSELQVRVNNVKQDPPIFTTGMIGKDYAIGRHGIHGLYWLFNIDVPSLLLSKGDNTIFLTQTMAFGPLARFQGIMYDYIRLEGPNSGS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01347 646 Coils Coil 552 572 - -
Vivi7g01347 646 CDD RGL4_C 450 640 - -
Vivi7g01347 646 CDD RGL4_N 11 298 - -
Vivi7g01347 646 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Vivi7g01347 646 FunFam Rhamnogalacturonate lyase B 336 435 - -
Vivi7g01347 646 Gene3D - 446 640 - -
Vivi7g01347 646 Gene3D - 336 427 - -
Vivi7g01347 646 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Vivi7g01347 646 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Vivi7g01347 646 CDD RGL4_M 339 438 IPR029413 -
Vivi7g01347 646 Pfam Polysaccharide lyase family 4, domain II 362 433 IPR029413 -
Vivi7g01347 646 SUPERFAMILY Starch-binding domain-like 382 424 IPR013784 GO:0030246
Vivi7g01347 646 Gene3D - 5 274 IPR014718 GO:0030246
Vivi7g01347 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01347 Vivi-Chr7 68011638 68020618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01347 1 643 Polysaccharide Lyase AT1G09890 62.208 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01347 K18195 - gmx:100815677 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01347 7 68011638 68020618 Vivi7g01347 7 68011638 68020618 ECH