Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01335 ATGGAACCACCAATGTACCAACACTCTCCGCCTTTGAACCTCACCGGAGAAAAAGAAGCCGGTCCCAGTCCCGATGCCGCCGCCGATGTTCACCTTCACATTGATTACGACACGAACGCTCTCGAAGATGGCGGCGGTGACGGCCACTGCGATGGAACCAACTCTGAATTGTCTCTTCAACCTAATGATAACTCCGATCAGCTCTCGCTGTCTTTCCGTGGTCAAGTCTATGTCTTTGAATCTGTCACTCCTGAGAAGGTTCAGGCGGTGTTGTTACTGTTGGGGGGATGTGAACTGCCTCAAGCGGGTACGGGTACGGGTACACAATATGTAGATGCTGTGCCTCAACAAACTCAGAGGGTATCAATGGAATTTCCTACCCGATACAGTCATCCACAGCGAGCAGCCTCATTAATCAGGTTCAGGCAGAAGAGGAAAGATAGATGCTTTGATAAGAAAGTTCGATACGATGTACGTCAAGAAGTTGCACTCAGGATGAAGCGAAACAAGGGTCAATTTACTTCGGGTAAGGAACAAGATGGAGCCAATAGTCCCACAGACCAGGATTCTGGGCAGGATGGAAGTCAATCAGAAACCTTCTGCACACATTGTGGCACAAGCTCAAAATCGACTCCTATGATGCGACGAGGGCCATCTGGTCCAAGATCGCTTTGCAATGCTTGTGGGCTATTCTGGGCAAATAAGGGTACTTTGAGAGACCTTTCCAAGAGACATCAAGAATCATCTATTGTACCAGCCGAACAGGTTGATCAACGTAATATCTCAGACTGTGGAACAGCATCTATCCCCACACATAACGATCTTGTCATTTTCTCTGGTAATGATAACCAAGCTTTGGTAGCTGATCATTGA 873 0.4777 MEPPMYQHSPPLNLTGEKEAGPSPDAAADVHLHIDYDTNALEDGGGDGHCDGTNSELSLQPNDNSDQLSLSFRGQVYVFESVTPEKVQAVLLLLGGCELPQAGTGTGTQYVDAVPQQTQRVSMEFPTRYSHPQRAASLIRFRQKRKDRCFDKKVRYDVRQEVALRMKRNKGQFTSGKEQDGANSPTDQDSGQDGSQSETFCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANKGTLRDLSKRHQESSIVPAEQVDQRNISDCGTASIPTHNDLVIFSGNDNQALVADH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01335 290 Gene3D - 192 251 IPR013088 GO:0006355|GO:0008270
Vivi7g01335 290 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Vivi7g01335 290 ProSiteProfiles GATA-type zinc finger domain profile. 195 254 IPR000679 GO:0006355|GO:0043565
Vivi7g01335 290 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Vivi7g01335 290 MobiDBLite consensus disorder prediction 175 214 - -
Vivi7g01335 290 Pfam tify domain 64 95 IPR010399 -
Vivi7g01335 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 245 - -
Vivi7g01335 290 MobiDBLite consensus disorder prediction 167 219 - -
Vivi7g01335 290 PANTHER GATA TRANSCRIPTION FACTOR 28 49 258 IPR045280 GO:0006355
Vivi7g01335 290 CDD ZnF_GATA 200 244 IPR000679 GO:0006355|GO:0043565
Vivi7g01335 290 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Vivi7g01335 290 Pfam CCT motif 134 175 IPR010402 GO:0005515
Vivi7g01335 290 MobiDBLite consensus disorder prediction 1 26 - -
Vivi7g01335 290 SMART tify_2 61 96 IPR010399 -
Vivi7g01335 290 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
Vivi7g01335 290 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01335 Vivi-Chr7 67815701 67820131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01335 57 290 Tify Gene Family AT4G24470 53.600 2.07e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi7g01335 CCT 1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01335 - - pvu:PHAVU_008G182900g 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01335 7 67815701 67820131 Vivi7g01335 7 67815701 67820131 ECH