Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01321 ATGGGTGGTGCACCTTCTATCAACCCATTCACCGTCCCATTTTTTCCCTTCTTCCCCATCATCATCATCGTCACCACCACACTCATTCTAATCGCAAGCGCCGAAGAACAAGATACAAAAGAAAATACAAAAATTCCCAGTCTCGAAGACGATAATGGCGCGGTCGACATGTCATTACAATCGCCAGTATCAGCAACCGCGGACCCCGATCAAGTGGTGACAAAATCAGTTTCATTCAAACCTAGCGCGGGAGCCATCGTAGGTGTTTTAGCAACAACATTCTCCCTCACGTTTCTACTTCTTCTCTATATTAAACACTGCAATGGCGTTGCTGGCAGCAATGCGAATCAAGACGGAGAGACGGATTTGCAAGAGAGGAAGAACTCCGGGATTGGACGGTCGGTTGTGGATTTATTACCGGCTTTCAAGTTTGGTTCATTGAGAGGACAAAAACAAGGACTCGAATGCGCGGTTTGTCTCACAGGGTTTGAGGATCAAGAGATACTAAGATTATTGCCGAAATGCAAACATGCTTTTCATATGGAATGTGTGGACACGTGGCTTGACGAACACTCCACGTGCCCGCTGTGTCGGTATAAAGTCGACCCTAATGACATCGTTCTTTCTCAGTCTCAAGAACTGTCGTCAGACGTTGAAAGCGGGAGAGTTATGAGTAATGTGATCAACAACAGCAATAGTAATAGCAATAGCAATGAATCACGACATGGAAATGAAAGTGTAGGTTCACGACGAGTTTCTTTTATGAGAGAGAGGAATAGTGAAGGGTGTTTGTTTAGTGGTCATTCAAGAAAGGTAAAGAGTGAGAGTGTTATAGGAGAACATAGGTTAGATCATCGTATAGTTTTGTCCCCTACTTGTTCTTATACTTCACATAGCGGGGTTCACCAACGGTGGAGCAATTTTGAAACAGATGATATGCTTTACTTAACTTCTGATAGGCTCATTAGTTGCAGTTCGTCTTCGCGTGACGGAAGGAGAAGAAGGATGAGGCGGAGTCACGGTGGCGGCGCTGATGATGAGATGGAGAGTGGTTTTGGTGGTTGTGGTGGGAGGAGGAGGAGGAGTGAAAGGGATTTGAGGAGTACTGTGTCGGAGATGACAGGGATGATGAGGTTTTTGAATAGGGATAGGAGGAGGGAAAGAGAACGGCGTGGTGGTGGTGGTAGGGATGAACAAGAAAGGCAAAGGGAGGGAGTGGCTTCGAGGTGGTGGGCTTGGATTTCTAGGCCACAACATTCATATAGTAGATCAGGTTCTGAATGA 1284 0.4595 MGGAPSINPFTVPFFPFFPIIIIVTTTLILIASAEEQDTKENTKIPSLEDDNGAVDMSLQSPVSATADPDQVVTKSVSFKPSAGAIVGVLATTFSLTFLLLLYIKHCNGVAGSNANQDGETDLQERKNSGIGRSVVDLLPAFKFGSLRGQKQGLECAVCLTGFEDQEILRLLPKCKHAFHMECVDTWLDEHSTCPLCRYKVDPNDIVLSQSQELSSDVESGRVMSNVINNSNSNSNSNESRHGNESVGSRRVSFMRERNSEGCLFSGHSRKVKSESVIGEHRLDHRIVLSPTCSYTSHSGVHQRWSNFETDDMLYLTSDRLISCSSSSRDGRRRRMRRSHGGGADDEMESGFGGCGGRRRRSERDLRSTVSEMTGMMRFLNRDRRRERERRGGGGRDEQERQREGVASRWWAWISRPQHSYSRSGSE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01321 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 205 IPR013083 -
Vivi7g01321 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 62 413 - -
Vivi7g01321 427 MobiDBLite consensus disorder prediction 352 368 - -
Vivi7g01321 427 MobiDBLite consensus disorder prediction 226 243 - -
Vivi7g01321 427 SUPERFAMILY RING/U-box 151 204 - -
Vivi7g01321 427 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Vivi7g01321 427 SMART ring_2 156 197 IPR001841 -
Vivi7g01321 427 FunFam RING-H2 finger protein ATL43 131 205 - -
Vivi7g01321 427 MobiDBLite consensus disorder prediction 378 405 - -
Vivi7g01321 427 CDD RING-H2_EL5-like 155 198 - -
Vivi7g01321 427 MobiDBLite consensus disorder prediction 226 249 - -
Vivi7g01321 427 Pfam Ring finger domain 155 198 IPR001841 -
Vivi7g01321 427 MobiDBLite consensus disorder prediction 326 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01321 Vivi-Chr7 67650302 67651725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01321 78 420 C3H Transcription Factor Family AT5G05810 36.567 1.06e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01321 K19041 - psat:127122408 541.576