Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01316 ATGGCTCGGCAGAAGATAAAGATAAAGAAAATAGATAATGCAACAGCAAGACAAGTAACATTTTCAAAGAGAAGAAGAGGGATCTTCAAGAAAGCTGAGGAGTTATCAGTGTTGTGTGATGCTGAAGTTGGTCTTATTATTTTCTCAACAACTGGGAAACTCTATGAATATGCCAGTTCAAGTATGAAGGACATAATTACAAGGTATACTCAGCACTCCCAACAAAACAACAAATTGGACAAACCTCTACAATTGCAGGTAGAGAAAAGCTTGTCAGCTGAATTGCAAAAGGAATTTGCTGATAAAACCCAACAACTAAGGGGACTGAAAGGAGAAGATTTTGAAGGGTTAAACATGGAGGGGTTGCAGCAATTGGAGAGGACACTTGAAACAGGACTCAAGCGTGTGATTGAGATGAAGGAAAAGAAAATTATGAATGAGATTGGTGCACTTCAGATAAAGAGTGTCCAGTTAGAAGAGGAGAACAATAATTTAAAGCAAAAGATGGTTATGCTATTTAAGGGAAAAAATCCTCTCTTGGGGGACTTGGATGTTACTACCATGCAGGAAATAGTCTCATGTGAGTCCATGAATAATGTATGCAGCTGCAATAGTGGACATTCTCTTGAAGATGATTCCTCTGATACTTCTCTTAGGTTAGGGTTGCCATTTCCTAAATTGAATGGTGATGAGGGAGCAATGAGGAATGGACTCTAA 717 0.3863 MARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDAEVGLIIFSTTGKLYEYASSSMKDIITRYTQHSQQNNKLDKPLQLQVEKSLSAELQKEFADKTQQLRGLKGEDFEGLNMEGLQQLERTLETGLKRVIEMKEKKIMNEIGALQIKSVQLEEENNNLKQKMVMLFKGKNPLLGDLDVTTMQEIVSCESMNNVCSCNSGHSLEDDSSDTSLRLGLPFPKLNGDEGAMRNGL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01316 238 Coils Coil 92 112 - -
Vivi7g01316 238 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vivi7g01316 238 Coils Coil 148 168 - -
Vivi7g01316 238 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g01316 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vivi7g01316 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 Pfam K-box region 92 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi7g01316 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g01316 238 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Vivi7g01316 238 Coils Coil 122 142 - -
Vivi7g01316 238 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vivi7g01316 238 FunFam Transcription factor, MADS-box 13 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01316 Vivi-Chr7 67573972 67588224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01316 1 224 MADS-box Gene Family AT2G22540 53.333 9.30e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi7g01316 K-box 4.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01316 - - vvo:131620668 464.922