Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01313 ATGCGGAGATTCTACGGGTTTGAGAGCTGGATAGATAAAGATTCAGATAAAATCAACGGTGAGAAACCAAAGTCGGAGAGAAAATCATCAGAAGCATGCAAGAGTCATAGGGAAGCTGAAAGAAGACGCAGACAGCGAATCAACAACCATCTCTCTACTCTTCGTTCTCTCCTCCCTAACACAGCAAAGTCAGACAAGGCGTCGTTGCTAGCGGAAGTGGTGCAGCACGTGAAACGGTTACGGAAGGAAGCTGATGACGTGGCGAACCGTTGGAATGATGAACCGTCGTCTTCGTGTAGTGGAGAACCGGGTTCGGTTGTTTCTGTTGAGGAAGCTGAGTTGTGGCCGTTTCCGGGGGAATCTGACGAGGCGACGGTGGGTTATTGCGGCGGGGAGGAAGGGGAAGGTAAAAGGATGAAAGTGACGGTGTGTTGTGAGGACCGGCCTGGACTGAACCGGGATCTGGCGCAAGCGATACGGTCGGTTCGGGCGAAACCGGTTAGAGCGGAGATAATGACGGTTGGGGGGAGGACGAAGAGTGTGGTGGTGGTTGAGTGGGGGAATGATGGAGGAGAGGAGAAGGAGGTGGAAGCGTTGGAGAGGGGGTTGAAGGCGGTGATGGAGAATCGGGCTTTTGTGGATTCGGGAATGGGCCCGTTGTTGTTGGGCCGTAAACGGGCTCGTGAGAGTAGTAAGGTTGAGTGTTCTTTGTTGTTGAGAAATGAGAATTTCTGCTGA 738 0.5257 MRRFYGFESWIDKDSDKINGEKPKSERKSSEACKSHREAERRRRQRINNHLSTLRSLLPNTAKSDKASLLAEVVQHVKRLRKEADDVANRWNDEPSSSCSGEPGSVVSVEEAELWPFPGESDEATVGYCGGEEGEGKRMKVTVCCEDRPGLNRDLAQAIRSVRAKPVRAEIMTVGGRTKSVVVVEWGNDGGEEKEVEALERGLKAVMENRAFVDSGMGPLLLGRKRARESSKVECSLLLRNENFC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01313 245 Gene3D - 25 89 IPR036638 GO:0046983
Vivi7g01313 245 MobiDBLite consensus disorder prediction 14 47 - -
Vivi7g01313 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Vivi7g01313 245 SMART finulus 37 86 IPR011598 GO:0046983
Vivi7g01313 245 Pfam Helix-loop-helix DNA-binding domain 33 80 IPR011598 GO:0046983
Vivi7g01313 245 Coils Coil 70 90 - -
Vivi7g01313 245 MobiDBLite consensus disorder prediction 14 50 - -
Vivi7g01313 245 CDD ACT_UUR-ACR-like 141 207 - -
Vivi7g01313 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 89 IPR036638 GO:0046983
Vivi7g01313 245 PANTHER TRANSCRIPTION FACTOR BHLH30 20 231 IPR045847 GO:0003700|GO:0006355
Vivi7g01313 245 SUPERFAMILY ACT-like 137 208 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01313 Vivi-Chr7 67492515 67494044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01313 28 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 47.059 6.67e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g01313 HLH 5.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01313 - - psat:127118672 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01313 7 67492515 67494044 Vivi7g01313 7 67492515 67494044 ECH
Vivi2g06552 2 201631308 201632807 Vivi7g01313 7 67492515 67494044 PCT