Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01227 ATGCGCATCCACACCAAACTCCATGCACCTCCACCACCTCTCACTCTCTTACTCCTTTATCTTTCGTTATTCTCTCCGGCAACCGCTCAGCCATCACAGACTTTATCGCCACCGCCGCCGCAGCAAGATCCATTTGCGAGAATGAAATTCGATAAAACCATGGCATCAGTTCTTATCATCCTCGTCATTGTTTTCTTCACTCTAGGCGTTATTTCCATCTACACTCGTCAATGCAGAGAGCAACGAATCAGAGGAAGGATTGATCTCGCCGTTCCGATCAACGGCGGCGACGGTTACAGACGACCGTACGGACTCGATCCGGTGATTATTGAGAATTTTCCGAACTTTGTTTATTCTGAGGTGAAGGATCTGAAAATTGGAAGAGTCACGCTAGAATGCGCCGTGTGCTTGAACGAGTTTGAAGATGATGAAACGCTGCGTTTGATTCCGGTTTGTAGCCACGTGTTCCATCGTGAGTGTATTGATGCGTGGTTGTTGCATCACTCCACGTGTCCGGTTTGTCGAGCGGATCTTGTTCCCGATCCGAAAGACGAGTTGTTGTCTTCTTCAATCGTGATTCAGATCTCGGATACGGATTTGGATGAACCGGTTTTAAATCATGAACCGGATTTGGTTGAACCGGTTGGTGTGGATGACAATGAGAATGACAATGACAAAACAAAAATAGTAAAAATGGCTCCAGGGGTCAATTTAGATGGAATAATGAAGAAACCGGTTCGGTCGAATTCTATGGGTTTAATGTTTGCAAGAATGTTCTCCCGGTCTAACTCGATTGGTCAATTGACGATTCGGGCGAGTGAAGATTGCGAGCGGTTCACGTTAAGATTGCCGAATGAAGTTCATAATAGGCTTGTGAATGACATGATATTGAACCGGACGAAAAGTTTGGGTGGGGAAATTGCACTGCAAAGTGAGAGGAGGGGTTTTAGAACGAGCAGTGTTGGGAGGAAATTTCTAAGGTACGAGCGGTTCAATGTGGAGAACCGGGTGGACCGGAGTGGGTTCGGTTGTGGTCCGTCTTTCTTGGGCCGGGTTGGTTCAATGAGGTTAACTAAGGATGTGAATAAAGTAACTATGGGTGTTGTGAATGAAGGTTATGTTGATGTTGAAGAACGTTCTTCGAGTCGATTAGTTCATAATATTGAGGATTGA 1173 0.4569 MRIHTKLHAPPPPLTLLLLYLSLFSPATAQPSQTLSPPPPQQDPFARMKFDKTMASVLIILVIVFFTLGVISIYTRQCREQRIRGRIDLAVPINGGDGYRRPYGLDPVIIENFPNFVYSEVKDLKIGRVTLECAVCLNEFEDDETLRLIPVCSHVFHRECIDAWLLHHSTCPVCRADLVPDPKDELLSSSIVIQISDTDLDEPVLNHEPDLVEPVGVDDNENDNDKTKIVKMAPGVNLDGIMKKPVRSNSMGLMFARMFSRSNSIGQLTIRASEDCERFTLRLPNEVHNRLVNDMILNRTKSLGGEIALQSERRGFRTSSVGRKFLRYERFNVENRVDRSGFGCGPSFLGRVGSMRLTKDVNKVTMGVVNEGYVDVEERSSSRLVHNIED 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01227 390 CDD RING-H2_EL5-like 132 175 - -
Vivi7g01227 390 SMART ring_2 133 174 IPR001841 -
Vivi7g01227 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 180 IPR013083 -
Vivi7g01227 390 Pfam Ring finger domain 132 175 IPR001841 -
Vivi7g01227 390 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vivi7g01227 390 PANTHER RING FINGER DOMAIN-CONTAINING 31 183 - -
Vivi7g01227 390 SUPERFAMILY RING/U-box 110 181 - -
Vivi7g01227 390 FunFam E3 ubiquitin-protein ligase ATL6 96 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01227 Vivi-Chr7 63242184 63243999 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01227 16 357 Rapid Response to Elicitors AT3G05200 38.162 7.03e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01227 K10664 - gmx:100815982 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01227 7 63242184 63243999 Vivi7g01227 7 63242184 63243999 ECH
Vivi7g01227 7 63242184 63243999 Vivi3g02681 3 44788312 44791155 PCT