Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01225 ATGCAGAAGAATAATCATTTTACTCTCTTGAGTTTCGATCATGGCCAAGCATGGCTCACTTTGTTGCTTGTTATTAGTCTCATACAAATCTCGCCGCCGGTAACCGGTCAACCGATGGGACCGGAAGATCCAACGGAGAACAACAAATCAGTTGCAACCATTATGGGAATTGTAGCCCTAATGTTCCTTTTCTCAGGTTTCCTTTCTCTCTACTCAGCCAAATGCAGTGATCGTCAACACGGTGTTATTTACGACCTCACTCTACCTAACGCTGCAAACGTTGTTAGGGCACAAAACAACGTGCCAAGTAATGGTTTAAACCAAGATGTCATCGACACTTTTCCGACTTTTCGTTACTCCAACGTGAAGGGACTCAAGATTGGGAAGAGCACTTTGGCTTGTGCTGTTTGTTTGAACGAGTTTCAAGATGATGAGACGTTGCGTTTGATTCCTAAATGTAGCCATGTTTATCACCATGGTTGTATAGATATTTGGCTTGTTTCTCATAATACTTGTCCGGTTTGTCGTGCTAACCTTGTTCCGGTAACCGACGAGGACGCTACCGAGTCTCCGATTGTATCCATTCAGATACCAGAAGGAGAATTACATCATAATGAAGAAGATCAAGAAGTAGAGCCTGTTGAAGAGGAACAAATAGGAGACACAATTGAAGTGGTATATTCACCTAAGATAGATTTACTTCGTAGGTCTAAGACATACTCTGCACCAATACGGTCGAGATCGACAGGATTCTTATCTTCTCTTTGGTTATCACGGTCAAACTCGACAGGTGTGTTGGTGCAGCCAGGTGAGGATTGTGAGAGATTTACATTGAGGTTACCGGATGAAGTTCGAAATCAGATGATGATGAACACGACCACGCTTAAGCGTGCGAAAAGCTGTGTGAGTTTTACGCGAATGAGCAGTGGAAAGTGTGGTTATAGGTCAAGAAGTTTCGGGTGTGGAAGTGGGAATGGTCATGTGCAGTATGAAAGGTTTGGAAGTGAGGAAGAAGAAAATTTAGGGTTTGTTAGGAACAATTGGAGTAATAAATCTGCAAGAAAATCTCATATGAAGTGTTTGGGCATTGATATGGACAATAATGGTGGTGAGAGATCATATGATCTTTTATGTCATGTGTAG 1143 0.4226 MQKNNHFTLLSFDHGQAWLTLLLVISLIQISPPVTGQPMGPEDPTENNKSVATIMGIVALMFLFSGFLSLYSAKCSDRQHGVIYDLTLPNAANVVRAQNNVPSNGLNQDVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLVPVTDEDATESPIVSIQIPEGELHHNEEDQEVEPVEEEQIGDTIEVVYSPKIDLLRRSKTYSAPIRSRSTGFLSSLWLSRSNSTGVLVQPGEDCERFTLRLPDEVRNQMMMNTTTLKRAKSCVSFTRMSSGKCGYRSRSFGCGSGNGHVQYERFGSEEEENLGFVRNNWSNKSARKSHMKCLGIDMDNNGGERSYDLLCHV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01225 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 182 IPR013083 -
Vivi7g01225 380 FunFam E3 ubiquitin-protein ligase ATL6 94 182 - -
Vivi7g01225 380 Pfam Ring finger domain 133 176 IPR001841 -
Vivi7g01225 380 CDD RING-H2_EL5-like 134 176 - -
Vivi7g01225 380 SUPERFAMILY RING/U-box 128 183 - -
Vivi7g01225 380 SMART ring_2 134 175 IPR001841 -
Vivi7g01225 380 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Vivi7g01225 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01225 Vivi-Chr7 63205576 63207587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01225 1 318 Rapid Response to Elicitors AT3G05200 36.364 4.81e-51 174