Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01221 ATGACCTTAGAGGCTGTGGTTTTTCCAGACAAAACATTCACTAACGGTTGCAAAGATTACTTGCATTCATTAGTTGAAACCGTTGCAAGAAGTGAAGAATCTTGGAGCAACAACAACTACAGTTTCCAAACTACAGAAGAAGAAGAACAAGATCTCTATGGAATAATCGAGAAGAATTTAAATCATAATATCGTTACGAATTTTGATTCTTCTTCTCCTTCCGTGATGCAAAATGGTAAAAGTCAATGGGATTCGAATTCTTCACCTGAAACTTCCAATCTTCCTCCTAGTTTTGTTGTAGAAGGTGCCCCCGCACTGGTTAGTCGTAGGCGCAAAAGACGTCGGACTGCGATTGCGAAAAATGAGGAGGAAATCGAGTGCCAGAGGATGACTCATATTGCAGTTGAGCGGAATAGAAGGAAGCAGATGAACGAGTACCTTGCTGTGCTCAGATCCTTGATGCCTCGTTCTTATGCAAAAAGGGGGGACCAAGCATCAATAGTTGGAGGAGCAATCAACTTCTTAAAAGAGCTAGAACACATTATCCAATCCATGAAAGGACAAAACAAAACAAAACAACAACAATCACATGAAAATGTATACAATAACAACTCATCATCATCATCACCCTTTGCTGATTTCTTCATGTTCCCTCAATACTCCACGTGTCCACCTCAGACCAACACGTGCTACCCTTCTAACCCTAACCAGTCACGTGCCACGGCAGACATTGAAGTGACATTGGTTGATAGCCATGCCAATATAAAGATAATGTTGAAGAAACAACATGGACACGTTATGAAGATGGTTGTTGGGATTCAAAACCTTGGCCTCAATATTCTTCACCTTAATGTTTCTACTTTGGATCATTTGGTTCTTGTTTCGGTTAGTGTCAAGGTAGAGGAAGGGTGTGAACTGAACACGGTGGATGAAATAGCAGCTGCTGTGAATAAACTATCAGTCAGAATCCAGACAGAAGCTGTATTATAA 990 0.4081 MTLEAVVFPDKTFTNGCKDYLHSLVETVARSEESWSNNNYSFQTTEEEEQDLYGIIEKNLNHNIVTNFDSSSPSVMQNGKSQWDSNSSPETSNLPPSFVVEGAPALVSRRRKRRRTAIAKNEEEIECQRMTHIAVERNRRKQMNEYLAVLRSLMPRSYAKRGDQASIVGGAINFLKELEHIIQSMKGQNKTKQQQSHENVYNNNSSSSSPFADFFMFPQYSTCPPQTNTCYPSNPNQSRATADIEVTLVDSHANIKIMLKKQHGHVMKMVVGIQNLGLNILHLNVSTLDHLVLVSVSVKVEEGCELNTVDEIAAAVNKLSVRIQTEAVL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01221 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Vivi7g01221 329 PANTHER MAX DIMERIZATION, MAD 87 326 - -
Vivi7g01221 329 Gene3D - 118 197 IPR036638 GO:0046983
Vivi7g01221 329 MobiDBLite consensus disorder prediction 70 97 - -
Vivi7g01221 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 200 IPR036638 GO:0046983
Vivi7g01221 329 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Vivi7g01221 329 CDD bHLH_AtFAMA_like 130 194 - -
Vivi7g01221 329 Coils Coil 175 195 - -
Vivi7g01221 329 MobiDBLite consensus disorder prediction 70 95 - -
Vivi7g01221 329 SMART finulus 133 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01221 Vivi-Chr7 63110567 63113604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01221 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.511 1.06e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g01221 HLH 7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01221 - - gmx:100805420 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01221 7 63110567 63113604 Vivi7g01221 7 63110567 63113604 ECH
Vivi7g01221 7 63110567 63113604 Vivi3g02119 3 34849475 34851604 PCT