Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01217 ATGCAGAAGAATAATCATTTTACTCTCTTGAGTTTCGATCATGGCCAAGCATGGCTCACTTTGTTGCTTGTTATTAGTCTCATACAAATCTCGCCGCCGGTAACCGGACAACCAATGGGACCGGAAGATCCAACGGAGAACAACAAATCAGTAGCTACCATTATGGGAATTGTAGCCCTAATGTTCGTCTTCTCAGGTTTTCTTTCTCTCTACTCAGCCAGATGCAGTGATCGTCAACACGGAGTTATCTACGACCTCACTTTACCTAATGCTGCAACCGGTGTTAGGGCACAAAACAACTTGCCAAGTAATGGTTTAAACCAAGATGTCATTGATACTTTTCCGACTTTTCGTTACTCCAACGTGAAGGGACTCAAGATTGGGAAAAGCACGTTGGCTTGTGCTGTTTGTTTGAACGAGTTTCAAGATGATGAAACATTGCGTTTGATTCCTAAATGTAGCCATGTTTATCATCATGGTTGTATAGATATTTGGCTTGTTTCTCATAATACTTGTCCAGTTTGTCGTGCTAACCTTGTTCCGGTAACCGACGAGGACGCTACCGAATCTCCGATTGTATCCATTCAGATACCAGAAGGAGAATTACACCATAACGAAGAAGATCAAGAAGTAGAGCATGTTGAAGAGGAACAAATAGGAGACACAATTGAAGTGGTATATTCACCTAAGATAGATTTACTTCGTAGGTCTAAGACATATTCTGCACCAATACGGTCGAGATCGACAGGATTCTTATCTTCTCTTTGGTTATCACGGTCGAACTCGACAGGTGTGTTGGTGCAGCCAGGTGAGGATTGTGAGAGGTTTACATTGAGGCTACCGGATGAAGTTCGAAATCAGATGATGATGAACACGACGACGCTTAAGCGTGCGAAAAGCTGTGTGAGTTTTACGCGAATGAGTAGTGGAAAGTGTGGTTATAGGTCAAGAAGTTTCGGGTGTGGAAGTGGGAATGGTCATGTGCAGTATGAAAGGTTTGGAAGTGAGGAAGAAGAAAATTTAGGGTTTGTTAGGAACAATTGGAGTAATAAATCTGCAAGAAAATCTCATATGAAGTGTTTGGGAATTGATATGGACAATAATGGTGGTGAGAGATCATATGATCTTTTATGTCATGTGTAG 1143 0.4173 MQKNNHFTLLSFDHGQAWLTLLLVISLIQISPPVTGQPMGPEDPTENNKSVATIMGIVALMFVFSGFLSLYSARCSDRQHGVIYDLTLPNAATGVRAQNNLPSNGLNQDVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLVPVTDEDATESPIVSIQIPEGELHHNEEDQEVEHVEEEQIGDTIEVVYSPKIDLLRRSKTYSAPIRSRSTGFLSSLWLSRSNSTGVLVQPGEDCERFTLRLPDEVRNQMMMNTTTLKRAKSCVSFTRMSSGKCGYRSRSFGCGSGNGHVQYERFGSEEEENLGFVRNNWSNKSARKSHMKCLGIDMDNNGGERSYDLLCHV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01217 380 Pfam Ring finger domain 133 176 IPR001841 -
Vivi7g01217 380 CDD RING-H2_EL5-like 134 176 - -
Vivi7g01217 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 182 IPR013083 -
Vivi7g01217 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 263 - -
Vivi7g01217 380 SMART ring_2 134 175 IPR001841 -
Vivi7g01217 380 SUPERFAMILY RING/U-box 128 183 - -
Vivi7g01217 380 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Vivi7g01217 380 FunFam E3 ubiquitin-protein ligase ATL6 94 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01217 Vivi-Chr7 62803855 62805444 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01217 1 318 Rapid Response to Elicitors AT3G05200 37.048 5.51e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01217 K10664 - gmx:100814384 345.895