Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01213 ATGGCTATGATCCAAAGAAAGCTCTTCCCAACAGAAACTACCTCAAACCAAACTTCAGATTGTTATGGCTTTTGTGATCCTTTATGTCCTTCAAATTGTTACACTAACACAAATTACTATTTCACACCCCCACCTTTAGAACACACTACACAAGTTAACCATATTGGCTCCTACTTCATCATCCTCATTTCATTATTCTCATTGATTTTTATCATCATTGTTTTCTATCTCATCAAAGTTAAATGCTACAATGAAATGTGTGGCTGGAGAAGCAATAACTCGGCTCGGTCTCAAGCCGTTAATAACACCGAAGAGCTTCTCAATGAAAATCGCGATCACAATCACGATCACCCCGTGTGGCTCATCGCTACGGTTGGTTTGCAACAATCGGTTATAAACTCGATTACGGTTTGCAAGTATAGAAAAAACGAAGGGCTAATCGAAGGAACGGAGTGTTCGGTTTGTTTGAATGAGTTTCATGAAGATGAAACGTTAAGACTATTGCCAAAGTGTAGTCATGCTTTTCACATTTCTTGTATTGACACTTGGTTGAGATCTCATACAAATTGTCCTCTTTGTCGAGCCGGTATTGTTTCCAACAACGTTACTCCTGAAGTAACGTTGTTGAATTCGGAACAAGAAAATAACAACTTGGGAAGAAATCGAGAGACTCAAGTGGAGAATCCAATGAATGATCAAGAAAATGTGTTGAACAATATTGTTATAGATGTTGGATTTGAAAACATGGTTGGAGAATCAAGTGATGAATCATCTGAATCTAGAAGATATCATCATCAAGTTGTTAAGAAAGAGGTGCATAAGGTTAGTCTTTGGAAGGTTATTACACAAAAAAGTAGCAAAACAATGCGTCGATGTTCGATTGAAGAGCTTTTGCATGTAAGGCCGGTGGCTATGAAAAAGTCTTTAAATCTACATGGAAGGAAGAGTTTTAAAAAGAAATTTGCGACTACATTTTGGACTGCAACATCATGA 993 0.3746 MAMIQRKLFPTETTSNQTSDCYGFCDPLCPSNCYTNTNYYFTPPPLEHTTQVNHIGSYFIILISLFSLIFIIIVFYLIKVKCYNEMCGWRSNNSARSQAVNNTEELLNENRDHNHDHPVWLIATVGLQQSVINSITVCKYRKNEGLIEGTECSVCLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVSNNVTPEVTLLNSEQENNNLGRNRETQVENPMNDQENVLNNIVIDVGFENMVGESSDESSESRRYHHQVVKKEVHKVSLWKVITQKSSKTMRRCSIEELLHVRPVAMKKSLNLHGRKSFKKKFATTFWTATS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01213 330 FunFam RING-H2 finger protein ATL54 127 200 - -
Vivi7g01213 330 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Vivi7g01213 330 SMART FANCL_C_2 148 201 - -
Vivi7g01213 330 Pfam Ring finger domain 151 194 IPR001841 -
Vivi7g01213 330 CDD RING-H2_EL5-like 151 194 - -
Vivi7g01213 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 202 IPR013083 -
Vivi7g01213 330 PANTHER RING-H2 FINGER PROTEIN ATL16 43 289 IPR044600 GO:0016567|GO:0016740
Vivi7g01213 330 SMART ring_2 152 193 IPR001841 -
Vivi7g01213 330 SUPERFAMILY RING/U-box 142 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01213 Vivi-Chr7 62729329 62730624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01213 6 261 C3H Transcription Factor Family AT1G72220 39.384 1.48e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01213 - - psat:127118731 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01213 7 62729329 62730624 Vivi7g01213 7 62729329 62730624 ECH