Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01209 ATGGAGAAATCACAACACGAAGTAGACGAAAACTTCCCACTCTTCAAACCATCTCTCAAACCCTCAACAAACTCTTCACCCGCCGCCACAATTATCCCTCAAAACAACATCATTACCCATGAAAACCCTAACTCCATCACCGAAAACACCGCCACTTTCTCCGAGCTCGGACTCTCGGAATGGGCGGTGAAAACCTGCAAGGAACTCAGAATGTTGGCACCACGTCGCGTGCAGCAGTACTGCATCCCGAAGATTCTAGAAGGCCGTCATGTAATCGGAATCGACGAGACTGGTAGCGGTAAAACGGCGGCGTTTGCGCTTCCTATACTCCAGCGTCTGGCGGAGCATCCGTTTGGTGTGTTTGCTCTCGTGGTGACGCCCACTCGTGAGCTTGCGTTTCAGCTGGCGGAGCAGTTTCGGGCCCTTGGTTCCTCGCTGCGACTCCGGATTGCGTTGATTGTTGGTGGTATGGATATGCTTAGACAGACTAAGGAGTTGGTTGCTAGGCCTCACCTTGTTATTGCTACTCCTGGAAGGATCAATGTTTTGCTCAAGGATAATCCGGAAATTGCGCCTGTTTTCTCCAGGACTAAGTTTCTTGTCTTGGATGAAGCAGACCGGGTTCTGGATGTTGGGTTTCAGGACGAATTGAAATTTATCTTCCAGAGCTTACCAGAAAGTCGGCAAAACCTATTCTTTTCTGCAACCACAACTAGTAATTTGCAGAAGTTGCGCGAGCGTTATCAAGATAAGCTGTATGCCTTCGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAACTTACTCAACAAGCTGTATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATACGGGAGTTCGGTCTGCCATTGTCTTTGTCTCCACTTGCAGAGATTGTCATCGTTTAAATTTAATGCTGGAAGTGCTCGATCAAGAAGCTGCAGCTCTGTATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGACTTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCTGGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATTAATTATGATGTTCCAAGGATTCCGCGAGATTATATACATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTTGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTCGTTCGTCAAATAGAGGCCCTTACCAAAAGGCAACTTGATATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCGAACATGAAGATGATTGATGATGGGTTTGAAGATAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAAAAAGGATTATTAAAGCAAAGAAGTAAGAGAAAGAGAAATAAAGAATTTTCCAAGAAAGGAAATAAACATGAAAAAGTGGAAGTGGATGCATCAGCAGATATAGCATCACTAAAGAAAAGGAGTAAGAAGAAATTGTAA 1542 0.4358 MEKSQHEVDENFPLFKPSLKPSTNSSPAATIIPQNNIITHENPNSITENTATFSELGLSEWAVKTCKELRMLAPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIALIVGGMDMLRQTKELVARPHLVIATPGRINVLLKDNPEIAPVFSRTKFLVLDEADRVLDVGFQDELKFIFQSLPESRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQAVFIPKKVKDVYLLHILSKMKDTGVRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHDFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRIPRDYIHRVGRTARAGRGGLALSLVTQNDVDLVRQIEALTKRQLDMIEYKENEVLSLMKKVFSAKNVANMKMIDDGFEDKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFSKKGNKHEKVEVDASADIASLKKRSKKKL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01209 513 CDD SF2_C_DEAD 267 399 - -
Vivi7g01209 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 255 IPR014001 -
Vivi7g01209 513 SMART helicmild6 309 390 IPR001650 -
Vivi7g01209 513 Pfam Helicase conserved C-terminal domain 283 390 IPR001650 -
Vivi7g01209 513 Gene3D - 21 254 IPR027417 -
Vivi7g01209 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 429 IPR001650 -
Vivi7g01209 513 MobiDBLite consensus disorder prediction 1 27 - -
Vivi7g01209 513 MobiDBLite consensus disorder prediction 487 501 - -
Vivi7g01209 513 MobiDBLite consensus disorder prediction 463 501 - -
Vivi7g01209 513 SMART ultradead3 70 270 IPR014001 -
Vivi7g01209 513 Pfam DEAD/DEAH box helicase 76 244 IPR011545 GO:0003676|GO:0005524
Vivi7g01209 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Vivi7g01209 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 410 IPR027417 -
Vivi7g01209 513 Gene3D - 262 511 IPR027417 -
Vivi7g01209 513 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 48 503 - -
Vivi7g01209 513 CDD DEADc_DDX49 53 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01209 Vivi-Chr7 62625851 62629685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01209 52 403 Eukaryotic Initiation Factors Gene Family AT3G13920 33.428 1.57e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01209 K14778 - gmx:100798597 721.85