Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01173 CTTGACATATGGTACTGCAATATGAATCAAAACTTTCTTCAACCTCTCCCATTGCTAAGTAGCTTCTTAGATTCAACTCCTCAACAATCCTTTCAACAATCATGTTTGAATCAAGCTGAAGATGTTACAGTGTCCTTACATATTGGTCTCCCTTCAATTGAAACACCAACTCAGAATGTTTCAAACAATTACTGGATACCAACTGAAGAACAAATTCGCATCGGTTTCAGTCATTTCTCTTGTTCCGTTTGTCATAAAACATTCAACCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGTTCGCAGTATCGAAGAGGACCCGGCTCGCTGAAAAGAACTCATCCGCGACCGTTGTTGGACATTCCATGCTATTGTTGTTCAGAGGGATGTAAGAACAACATTGAGCATCCAAGAGCTAAGCCATTGAAAGATTTCAGAACATTGCAGACACATTACAAAAGGAAGCACGGTTCGAAAAGCTTTACTTGTCGAAAATGTGGGAAATGTTTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAGCGTTGGCTTTGTTTCTGTGGTTCAGATTTCAAACACAAGAGGTCACTGAAAGATCATGTCAATGCTTTTGGATTAGGTCATGGTCCTTTTTCTTCTTCCTCTGATGGCATTTGA 675 0.4074 LDIWYCNMNQNFLQPLPLLSSFLDSTPQQSFQQSCLNQAEDVTVSLHIGLPSIETPTQNVSNNYWIPTEEQIRIGFSHFSCSVCHKTFNRYNNLQMHMWGHGSQYRRGPGSLKRTHPRPLLDIPCYCCSEGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKSFTCRKCGKCLAVKGDWRTHEKNCGKRWLCFCGSDFKHKRSLKDHVNAFGLGHGPFSSSSDGI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01173 224 SUPERFAMILY beta-beta-alpha zinc fingers 50 100 IPR036236 -
Vivi7g01173 224 FunFam Zinc finger protein WIP2 132 214 - -
Vivi7g01173 224 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Vivi7g01173 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Vivi7g01173 224 PANTHER ZINC FINGER PROTEIN WIP2 15 218 IPR043584 GO:0003700|GO:0010468
Vivi7g01173 224 Gene3D Classic Zinc Finger 76 102 - -
Vivi7g01173 224 SMART c2h2final6 163 183 IPR013087 -
Vivi7g01173 224 SMART c2h2final6 126 158 IPR013087 -
Vivi7g01173 224 SMART c2h2final6 79 101 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01173 Vivi-Chr7 61331946 61332702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01173 1 219 C2H2 Transcription Factor Family AT1G34790 57.634 5.60e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi7g01173 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01173 - - vvo:131619172 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01173 7 61331946 61332702 Vivi7g01173 7 61331946 61332702 ECH