Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01172 ATGGCTTATCCGCATTACCGATCGCAGTTCGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGACTAGCTTGGGAAACTCCAACTGATGAAATGAGGACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGATACGGATTTGTAACATTTCGTGATCCGGAATCAGCAAGAAGAGCTTGTGCTGATCCGAATCCAGTAATTGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCCTCACCACCAAGAGGCAGAGGTAGTACATATCAAGGTGGGGGAGTAGGAGCAGGGACAGGAGGGGCAGCGGCAGCAGTTGGGTACGGTGGTGTTCCGGCGGGAGGGGCAGCACAAATGGCAGGAGGAGGAGCAGCAGCACCAGTAATGTACCAACCATATGGCTACCCCACCTACACTCCTGAATATGGGTACCATCAAGCCACAATGTATAACCCTCAGATTCAGCAAGCACAATACTACCAACAAGTGTATGGACCATCATCTTCAACTATGGCCTCACCATATTATTATGGCTATTCTGTGCAACCAGCTGCACCAAGGAGTACATTTTCTACCCCTCAACCACATCGCATACCAGCAGGACCATCCTATCTATACTACCCTACTACACCGATCGAAGGCGCTCCCTTCTCTCCTGCATATCGTCCATTTAATCAGCAACCAATAATAAGGCATCCGTCTCCTTCCCCTTCTCCGACCGATTCACAGACTCAGCAACGTACTTCATCGGAGACAGCATCTGGAGTAGTTATAACTTCAGAAAGTTCAAATACTCAAGGGAAGAACAACTAA 867 0.466 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGSTYQGGGVGAGTGGAAAAVGYGGVPAGGAAQMAGGGAAAPVMYQPYGYPTYTPEYGYHQATMYNPQIQQAQYYQQVYGPSSSTMASPYYYGYSVQPAAPRSTFSTPQPHRIPAGPSYLYYPTTPIEGAPFSPAYRPFNQQPIIRHPSPSPSPTDSQTQQRTSSETASGVVITSESSNTQGKNN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01172 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Vivi7g01172 288 Gene3D - 3 113 IPR012677 -
Vivi7g01172 288 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vivi7g01172 288 PANTHER BOULE-RELATED 6 265 - -
Vivi7g01172 288 MobiDBLite consensus disorder prediction 235 288 - -
Vivi7g01172 288 MobiDBLite consensus disorder prediction 254 288 - -
Vivi7g01172 288 SUPERFAMILY RNA-binding domain, RBD 9 119 IPR035979 GO:0003676
Vivi7g01172 288 CDD RRM_RBM24_RBM38_like 16 91 - -
Vivi7g01172 288 FunFam RNA-binding protein 24-B isoform X1 3 113 - -
Vivi7g01172 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01172 Vivi-Chr7 61231221 61235357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01172 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.59e-15 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01172 7 61231221 61235357 Vivi7g01172 7 61231221 61235357 ECH