Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01169 ATGGCTGATTCACTCTCAGTTAATGTTGATTCATTACATAACCTTGAATTAAATGCTAAACAATCAAAATTTACTACCTATGAGGCTAAACACTTTGCATCTAGCATCCAAAAGGCTATTGCTGAATTTGTAGGCACATATATTCTTATATTTGTTGGTTGTGGAGCTGCTCTTGTCAATGAGAGGCTACCAATCACAGTTGTTGGCGTAGCGACTGTTTCGGGCTTAGCTTTAACTGTCGCTATATATTCGGTTGGTCATGTATCTGGTGGTCATTTCAATCCTGCCGTCACAATCGCATTGGCCACCGTTCAAAAAATTCAATTCAAACTTGTACCTGTTTATGTGGTGTGTCAGTTAATGGGTGGCACACTGGCCACTCTCACTCTGAAAGTGTTGTACCATAACAAGGTGGATATTGGTGTAACACTGACCCAATATTCAAATTCAACTTCTGACCTTGAAGCATTGCTGTGGGAATCCATAATTACTTTCATATTGATGCTTACTATTTGTGGTGTTGCCACTGATCACAGAGGAAGCAAAGAACTTGCTGGAGTTGCCATAGGCATTTCAGTTCTGATTAACATCATCATTGCCGGGCCTATTACAGGAGCTTCGATGAATCCTGCAAGGAGTTTAGGCCCTGCCATAGTATCAGGCAATTACAAAAACATTTGGGTTTATATCATAGGTCCAACTATTGGAGCAATCTTTGCAAGTGTAGTTTACACTTTCCTAAGAGTAACAGAACCAACTCAACCAGAACTACCATATCACATGTGA 786 0.402 MADSLSVNVDSLHNLELNAKQSKFTTYEAKHFASSIQKAIAEFVGTYILIFVGCGAALVNERLPITVVGVATVSGLALTVAIYSVGHVSGGHFNPAVTIALATVQKIQFKLVPVYVVCQLMGGTLATLTLKVLYHNKVDIGVTLTQYSNSTSDLEALLWESIITFILMLTICGVATDHRGSKELAGVAIGISVLINIIIAGPITGASMNPARSLGPAIVSGNYKNIWVYIIGPTIGAIFASVVYTFLRVTEPTQPELPYHM 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01169 261 NCBIfam MIP family channel protein 41 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Vivi7g01169 261 Gene3D Glycerol uptake facilitator protein. 4 256 IPR023271 -
Vivi7g01169 261 PANTHER AQUAPORIN NIP2-1 22 251 IPR034294 -
Vivi7g01169 261 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 CDD MIP 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi7g01169 261 SUPERFAMILY Aquaporin-like 33 258 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01169 Vivi-Chr7 60764217 60766360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01169 37 257 Major Intrinsic Protein MIP AT5G37820 49.333 1.50e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01169 K09874 - gmx:100798380 387.497