Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01142 ATGACGAACCAAAAGGTGTTGGGAAAGCAACGTGTGAATGAGAGGCTCATGGAGTTAGCAATGTCGATTTCGAATTCTAATGATTTACCGGAAACGGCAGTGCCTGAATTAATGGCTTTGTTTGGTGAGTTTTTGGCTCAGCAGAAAAACAATCTTGTGAAGCCTTTGGAAGATGAAAATGGTAAAGGAATCACAAAAAGTAACTCATGGATTGATTCCATGAGAGCTTCTTCTCCTACTAGAACAAGAAACACCTCCGAAAATCGCGACCAAGTTCACTGGAAGCTTTTTCATCCTTCTGCATTGAACATGTTTGATCAAATAATGTCCAAAGCAAATGGAAAACAAATAGTTGTTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTAGCAGATCCAAATAAAGCTTACATGACCAAAAAGATGAGAATGACATTGAAGGACATAGCAAGGCATTTTCCTACAGCTATAGTTAGTGGAAGATGTTTAGACAAGCTATTTAGCTTTGTAAGATTGACAGAATTATACTATGCTGGAAGTCATGGAATGGATATAAAAGGACCAACAAATAAAAGAAGCACTAAAAATGGTAGTAATGATGGGGTACTTTTGCAGCCTGCAAGTGAATTCTTGCCCATGATCAATGAGGTTTATAAAATTTTGGTGGAAAAAACAAAAGATGTTCCCGGAGCTATGGTGGAAAATAACAAATTTTGTTTGTCTGTGCATTTTCGTTGTGTTGATGAAAAGAGTTGGACAGCATTGGCTGAACAAGTAAGCTTAGTGCTCAATGAATACCCAAAATTAAAGCTAACTCAAGGAAGAAAAGTGTTGGAAATTCGACCAACCATAAAATGGGACAAAGGAAGAGCTCTTGAATTTTTGTTAGAGACACTTGGATTTGCAAATTGTAACAATGTATATCCAATCTATATCGGTGATGATCGAACCGACGAAGATGCCTTTAAGGTTTTAAGCAATAGAGGTCAAGGAAGTGGGATTCTAGTTTCCAAAATTCCAAAAGAAACCAATGCTTCTTACACTTTGCAAGATCCATCTGAGGTTGGACAATTTCTGCAGCATTTGGTGGAATGGAAAAGAACAAATACTCATAACCACAAGTTATAG 1131 0.3731 MTNQKVLGKQRVNERLMELAMSISNSNDLPETAVPELMALFGEFLAQQKNNLVKPLEDENGKGITKSNSWIDSMRASSPTRTRNTSENRDQVHWKLFHPSALNMFDQIMSKANGKQIVVFLDYDGTLSPIVADPNKAYMTKKMRMTLKDIARHFPTAIVSGRCLDKLFSFVRLTELYYAGSHGMDIKGPTNKRSTKNGSNDGVLLQPASEFLPMINEVYKILVEKTKDVPGAMVENNKFCLSVHFRCVDEKSWTALAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLETLGFANCNNVYPIYIGDDRTDEDAFKVLSNRGQGSGILVSKIPKETNASYTLQDPSEVGQFLQHLVEWKRTNTHNHKL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01142 376 Gene3D - 119 350 IPR023214 -
Vivi7g01142 376 MobiDBLite consensus disorder prediction 62 85 - -
Vivi7g01142 376 SUPERFAMILY HAD-like 118 367 IPR036412 -
Vivi7g01142 376 Pfam Trehalose-phosphatase 120 354 IPR003337 GO:0003824|GO:0005992
Vivi7g01142 376 CDD HAD_TPP 118 357 - -
Vivi7g01142 376 Gene3D - 199 284 - -
Vivi7g01142 376 NCBIfam HAD-IIB family hydrolase 119 327 IPR006379 -
Vivi7g01142 376 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 60 373 IPR044651 GO:0004805|GO:0005992
Vivi7g01142 376 MobiDBLite consensus disorder prediction 56 88 - -
Vivi7g01142 376 FunFam Trehalose 6-phosphate phosphatase 214 373 - -
Vivi7g01142 376 FunFam Trehalose 6-phosphate phosphatase 208 284 - -
Vivi7g01142 376 NCBIfam trehalose-phosphatase 115 364 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01142 Vivi-Chr7 59157556 59160298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01142 106 360 Trehalose Biosynthesis Gene Families AT1G23870 25.094 3.42e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01142 K01087 - gmx:100792915 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01142 7 59157556 59160298 Vivi3g04505 3 81558948 81561277 PCT