Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01140 ATGGCAGGTAGAATGGATTTCTTCAACAATTCACAAGATCCATTCAATGGTGAGTTAATGGAAGTACTTGAACCTTTTATGAAGAGTTCTTCCACTACTCCCTCTTCCTCTTTATCTACTTCTACACCCCCTTATCTAAATTCACACCTCCCTTCAACTTCATCCCAATTTTACTCTTCTACCCCTACCTATTTCCAACCCTCTTTTTCTTCCCCTTCTTTTCCTCCTCCCCAGCCCAATTTCTACACAGAAAACGGTTACAGTTCATCCATGATGAATTACCAATTTCCCTCTGGAAATTCATCAACCAGCCAAAATTTCATTGGCTTTGAACAACAACCACAACCGAATTCTGCACTTGGGCTAAACAACTTAACTCCATCACAAATCAATCAGATCCAACACCAGATCCAGTTTCAGCCTCAACAAATCAATCCAAATTTGAGTTTTCTCGGGCCTAAGCCCGTTCCAATGAAACAGCCCGGTGCACCTCCGAAGCCGACTAAGCTTTACAGAGGTGTAAGGCAGAGACATTGGGGGAAATGGGTGGCTGAGATAAGATTGCCCAAGAACAGAACAAGGCTCTGGCTTGGAACTTTTGATACTGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTACAGACTAAGAGGTGATTTCGCTAGGCTTAATTTCCCGAACATGAAGGACCAGCAAGGTCTGTTTGGGGAGTTTAAGACTTTGCATTCGTCTATCGATGCTAAACTTGATGCTATTTGTGAGAGTTTAGGCAATGATGATGCGAAGAAATCGGGGAAAGTGGAGAAAAATGTGAAAGGTTCTAAGAAAGGTTTGAAGAAAGAGGTTCAAGTTCAACCGATTGTTGTTGCTGAAAATAATGATGGTGATAACAAGAAAGTTGTGGTTGAAAGCTCGAGTGAAGGGTCGGATGATTCTTCGCCACTTTCTGATCTTACTTTTGGTGATTTTGGGGAGCCGCAGTGGGAGAATTGTTGTGAGCAGTTTAATCTGCAGAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTTAG 1056 0.4214 MAGRMDFFNNSQDPFNGELMEVLEPFMKSSSTTPSSSLSTSTPPYLNSHLPSTSSQFYSSTPTYFQPSFSSPSFPPPQPNFYTENGYSSSMMNYQFPSGNSSTSQNFIGFEQQPQPNSALGLNNLTPSQINQIQHQIQFQPQQINPNLSFLGPKPVPMKQPGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQGLFGEFKTLHSSIDAKLDAICESLGNDDAKKSGKVEKNVKGSKKGLKKEVQVQPIVVAENNDGDNKKVVVESSSEGSDDSSPLSDLTFGDFGEPQWENCCEQFNLQKFPSYEIDWDSL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01140 351 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Vivi7g01140 351 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Vivi7g01140 351 SMART rav1_2 170 233 IPR001471 GO:0003700|GO:0006355
Vivi7g01140 351 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 351 - -
Vivi7g01140 351 CDD AP2 169 228 IPR001471 GO:0003700|GO:0006355
Vivi7g01140 351 SUPERFAMILY DNA-binding domain 170 227 IPR016177 GO:0003677
Vivi7g01140 351 ProSiteProfiles AP2/ERF domain profile. 170 227 IPR001471 GO:0003700|GO:0006355
Vivi7g01140 351 FunFam Ethylene-responsive transcription factor 2 169 228 - -
Vivi7g01140 351 Gene3D AP2/ERF domain 170 229 IPR036955 GO:0003700|GO:0006355
Vivi7g01140 351 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01140 Vivi-Chr7 59071172 59073065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01140 1 351 AP2-EREBP Transcription Factor Family AT1G78080 44.619 5.62e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi7g01140 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01140 K09286 - gmx:732559 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01140 7 59071172 59073065 Vivi3g04500 3 81416836 81418675 PCT