Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01125 ATGATTGTGGAATGTGAACCTCAAGCTTCTATGCTTAATGAGGACTTTATATGCTTCTTTCCATTCAGCTTCAGCATCGGTTATGGTTATGTAATGAAGAGTGGAATGAAGAGTTTTATCATACCAGTGTTCAATATGGCAAGACCATTAGCAAAAATATGTGACATCAATGACAGCAAAGAACTTTGGAAAGTTTCTGTTTGTGTGCACCACAAATGGACAGTTGTTTCGAACAAGAGGGAGCATTTTGAGATGATTTTTGTTGATGTATCGGGTAGTGACATACATGTTGTTGTTCCTGCACCGCATGTATCTCTTTTTTCTGAAAAAATGGTCTTGGATCATAGTTACACTGTTTCCAATTTTAAGGTTCAGGCTAATGTTGCGGCTTTCAGACCTTCGTCTCATAAGTTTATGTTGAAGTTTACTGCTGGCACTACGGTTACGGATGATAACAACGCTGAAATACCTCCAAAGCCGTTGGTGTTTACTAAATTTACTGATATAATAAACGGCAACTTTAACAAGGATGTGCTAATAGATGTCATTGGTATGGTGGAAAGTATTGGGTATTCACAGACCACATCAAGTGCCCGGAAACAGCAGATTAACATGATGTTGCGTGACGGGGGTGAGAATACTATCAATTGCACGCTTTGGGAATCCTATGCTGAACAATTCATGAAGTTCAAGCAGGAGCGCGAAGATGATTCTGGTCCTATTTTTGTCATGATTCAATATGCTAAAGTCAAGGAACAGGGTAAGTTTCCACTGTCCGTGACAAACATGTTTAATGTTACCGTCCTTGGTCTGAATACTGATTTACTGCCGATGAAAGAGTTTATAGAAAGTTTTCCGAAGGATTCCATGATTACGTTGTCTGGCCAGGAGGGTTCCAATTCACAGCTTTCAGCACAGAACTCTGAAAATCAACAGATGACTCCTGTACAGAAATTGCTTCCAAAGGCTGTTGTAATGCCTATAGGGGATATTATAAAACTCAGAACTATTACATTTTGTGCGACTGTGGGAGAAACTAAAATGCTGGTTGCCTCTCCGCATGGCTGGTATTATCGTGGTTGTCATGCTTGCTCATGTATTGCGCGTGGTGACAGAGCTCCGTTTGAGTGTGAGGCTGGACATTTCACTGAGGCAGAGATTTTTAGATTAACATCCTTGTATAAGATTGAGATTGAGGTTACTCATGCCGGTAATAGCTGTAACTTTTTATTTTAG 1236 0.4005 MIVECEPQASMLNEDFICFFPFSFSIGYGYVMKSGMKSFIIPVFNMARPLAKICDINDSKELWKVSVCVHHKWTVVSNKREHFEMIFVDVSGSDIHVVVPAPHVSLFSEKMVLDHSYTVSNFKVQANVAAFRPSSHKFMLKFTAGTTVTDDNNAEIPPKPLVFTKFTDIINGNFNKDVLIDVIGMVESIGYSQTTSSARKQQINMMLRDGGENTINCTLWESYAEQFMKFKQEREDDSGPIFVMIQYAKVKEQGKFPLSVTNMFNVTVLGLNTDLLPMKEFIESFPKDSMITLSGQEGSNSQLSAQNSENQQMTPVQKLLPKAVVMPIGDIIKLRTITFCATVGETKMLVASPHGWYYRGCHACSCIARGDRAPFECEAGHFTEAEIFRLTSLYKIEIEVTHAGNSCNFLF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01125 411 Gene3D - 154 291 IPR012340 -
Vivi7g01125 411 Pfam Domain of unknown function DUF223 84 179 IPR003871 -
Vivi7g01125 411 CDD RPA1_DBD_A_like 64 148 - -
Vivi7g01125 411 CDD RPA1_DBD_B_like 181 286 - -
Vivi7g01125 411 SUPERFAMILY Nucleic acid-binding proteins 163 289 IPR012340 -
Vivi7g01125 411 Gene3D - 48 150 IPR012340 -
Vivi7g01125 411 SUPERFAMILY Nucleic acid-binding proteins 49 149 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01125 Vivi-Chr7 58259617 58262936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01125 1 365 Core DNA Replication Machinery Family AT5G08020 21.642 2.48e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01125 - - vvo:131628318 720.309