Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01121 ATGGGTCGTGTTAAACTCGAGATCAAAAGAATAGAGAATACAACAAATCGACAAGTTACATTCTCTAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCTATCCTATGTGATATTGATATTGCACTTATAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTATATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGGTACCATACAGAAGGGGTATTCAAAATAAGGAGTTTTTGCTCAGGACACTTCAACAGTTGAGGAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTAAGTAGGTTACAACAACAACTTCAAATGGCAGAGGAGCAGATAAGGATATACGAACCCGACCCATTAAAGATGACATCTATGGCAGAGCTTGAAACCAGTGAAAAAAATGTAGTAGAAATATTGGCACGTGTCATGCAGAGAAAGGAACTTTTGTTGAATAATCATCTATCTTCGTATGATCCATCTGGTATTCAGGGAATGCCAAACACTTTCGAAAATGTAGGATGGCTGCAAGATGGTAGTCAGAACCATCAAAATATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACTGTGTACGGTTCATTTTCACAAGGAACAAGTTCAAATGTTGATCCAAGAGCTATAGGTGAATGCCACGTGGCAAATCCAAATGATGCAAATCTTCAAGCATGGCCACAAGGATACACATTATATCCTCATCATCAACAACCTCAACAACATCAACAACAACATCAACATCAACATCATCATATTCAACATGACATGGTTGGAACTGATCATCATCAACAACATCATCATCACCATAATCTTCAAGATATGATGCCACATGGACAAATCAACATGCCCATCACTGCCTCACAAGTTGAACCACCAAAAAATGAATCAACAGATCAATATGATCAATGTAAACAACCTAATCATCAGCTTAATTCATGCTCAATGACACATACTAATTAA 1095 0.3717 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKRRIEDVLTRYINLPDQERDNAVSFPEVPYRRGIQNKEFLLRTLQQLRSENDIALHMSNPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPDPLKMTSMAELETSEKNVVEILARVMQRKELLLNNHLSSYDPSGIQGMPNTFENVGWLQDGSQNHQNIFDASAPMDPLRDLSSTVYGSFSQGTSSNVDPRAIGECHVANPNDANLQAWPQGYTLYPHHQQPQQHQQQHQHQHHHIQHDMVGTDHHQQHHHHHNLQDMMPHGQINMPITASQVEPPKNESTDQYDQCKQPNHQLNSCSMTHTN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01121 364 MobiDBLite consensus disorder prediction 326 364 - -
Vivi7g01121 364 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 FunFam MADS-box transcription factor 41 13 93 - -
Vivi7g01121 364 MobiDBLite consensus disorder prediction 294 318 - -
Vivi7g01121 364 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vivi7g01121 364 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 291 - -
Vivi7g01121 364 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vivi7g01121 364 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vivi7g01121 364 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi7g01121 364 MobiDBLite consensus disorder prediction 279 364 - -
Vivi7g01121 364 Coils Coil 126 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01121 Vivi-Chr7 57812011 57818010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01121 1 331 Type I MADS-box Gene Family AT1G22130 54.572 8.25e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi7g01121 SRF-TF 2.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01121 - - gmx:100305913 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g01121 7 57812011 57818010 Vivi7g01121 7 57812011 57818010 ECH