LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi7g01111	ATGCGTGCTTCATCAGTTGTGATTGCCGAGCTAGTGTTATGTAGTGCAAGTATCTTTAGTGATCATGACATGATTGACTTTGATTTTGGTTTCACTATTTCTTTTGGTCATATTAGATACGGAGAGCCAGCAGTTGAGGTTGCAAATGAAGGCGTTGGCGCTGCAGGGCATGCAATTGAGTGGAATGAAGAGTTTGTAACTCCTACATGGTTTGGTTACTTATGGTATTGGTTGGCTACACTTTTCTGCAGTATCATACCAGTGTTCAATATGGCAAGACCATTAGCAAAAATATGTGACATCAATGACAGCAAAGAACTTTGGAAAGTTTCTGTTCGTGTGCACCACAAATGGACAGTTGTTTCGAACAAGAGGGAGCATTTTGAGATGATTTTTGTTGATGTATCGGGTGGTGACATACATGTTGTTGTTCCTGCACCGCATGTATCTCTTTTTTCTGAAAAAATGGTCTTGGATCATAGTTACACTGTTTCCAATTTTAAGGTTCAGGCTAATGTTGCGGCTTTCAGACCTTCGTCTCATAAGTTTATGTTGAAGTTTACTGCTGGCACTACGGTTACGGATGATAACAACGCTGAAATACCTCCAAAGCTATTGGTGTTTACTAAATTTACTGATATAATAAACGGCAACTTTAACAAGGATGTGCTAATAGATGTCATTGGTATGGTGGAAAGTATTGGGTATTCACAGACCACATCAGGTGCCCGGAAGCAGCAGATTAACATGATGTTGCGTGACGGGGGTGAGAATACTATCAATTGCACGCTTTGGGAATCCTATGCTGAACAATTCATGAAGTTCAAGCAGGAGCGCGGAGATGATTCTGGTCCTATTTTTGTCATGATTCAATATGCTAAAGTCAAGGAACAGGGTAAGTTTCCACTGTCCGTGACAAACATGTTTAATGTTACCGTCCTTGGTCTGAATACTGATTTACTGCCGATGAAAGAGTTTATAGAAAGTTTTCCGAAGGATTCCATGATTACGTTGTCTGGCCAGGAGGGTTCCAATTCACAGCTTTCAGCACAGAACTCTGAAAATCAACAGATGACTCCTGTACAGAAATTGCTTTCAAAGGCTGTTGTAATGCCTATTGGGGATATTATAAAACTCAGAACTATTACATTTTGTGCGACTGTGGGAGAAACTAAAATGCTGGTTGCCTCTCCGTATGGCTGGTATTATCGTGGTTGTCATGCTTGCTCATGTATTGCGCATGGTGACAGAGCTCCGTTTGAGTGTGAGGCTGGACATTTCACTGAGGCAGAGATTTTTAGGTATAAGATTGAGATTGAGGTTACTCATGCCGGGAATAGCTGTAACTTTCTATTTTGGGACCGAGAGTGTGAGTTACTTTTGGGATTGTCTGCTTCTCAGCTGCGTCATACAATGATTAAGGCTGGCATTCATGATCCCTTGGAATTCCCACTGGCATTGGATCAGATGTTGGATTGCAAGATGGCTTTCAAAGTTAAGTGGCAACCACGTTGGAAGAATGCCTCTGTCGTTATGCTATTGAAGAATGACCCTTTTGTGAAAGAGCTTGCTGATCAGTTTGACCCAGATGAGATGAAACAGCCTGCTGTCGAAGCAATGACCACTGATCTTGATGTGAGTTCAACGCACAGCACAGATCCACTTACTCCTATTGGAAAAAGACACTTTCCAGGCGCATCAAGCGAGTCAACAACCTCGTATGCCACGTGTGATGGAGAACTTTCATCAAACAAGTTAAAGAAAATTATAAAAATAGAGAAGATAGATTAG	1791	0.4149	MRASSVVIAELVLCSASIFSDHDMIDFDFGFTISFGHIRYGEPAVEVANEGVGAAGHAIEWNEEFVTPTWFGYLWYWLATLFCSIIPVFNMARPLAKICDINDSKELWKVSVRVHHKWTVVSNKREHFEMIFVDVSGGDIHVVVPAPHVSLFSEKMVLDHSYTVSNFKVQANVAAFRPSSHKFMLKFTAGTTVTDDNNAEIPPKLLVFTKFTDIINGNFNKDVLIDVIGMVESIGYSQTTSGARKQQINMMLRDGGENTINCTLWESYAEQFMKFKQERGDDSGPIFVMIQYAKVKEQGKFPLSVTNMFNVTVLGLNTDLLPMKEFIESFPKDSMITLSGQEGSNSQLSAQNSENQQMTPVQKLLSKAVVMPIGDIIKLRTITFCATVGETKMLVASPYGWYYRGCHACSCIAHGDRAPFECEAGHFTEAEIFRYKIEIEVTHAGNSCNFLFWDRECELLLGLSASQLRHTMIKAGIHDPLEFPLALDQMLDCKMAFKVKWQPRWKNASVVMLLKNDPFVKELADQFDPDEMKQPAVEAMTTDLDVSSTHSTDPLTPIGKRHFPGASSESTTSYATCDGELSSNKLKKIIKIEKID	596

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi7g01111	596	SUPERFAMILY	Nucleic acid-binding proteins	208	334	IPR012340	-
	Vivi7g01111	596	Gene3D	-	93	195	IPR012340	-
	Vivi7g01111	596	Pfam	Domain of unknown function DUF223	129	224	IPR003871	-
	Vivi7g01111	596	MobiDBLite	consensus disorder prediction	546	572	-	-
	Vivi7g01111	596	Gene3D	-	199	336	IPR012340	-
	Vivi7g01111	596	Gene3D	-	341	517	IPR012340	-
	Vivi7g01111	596	CDD	RPA1_DBD_B_like	226	331	-	-
	Vivi7g01111	596	CDD	RPA1_DBD_A_like	109	193	-	-
	Vivi7g01111	596	SUPERFAMILY	Nucleic acid-binding proteins	94	194	IPR012340	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi7g01111	Vivi-Chr7	57504287	57509047	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi7g01111	91	468	Core DNA Replication Machinery Family	AT5G08020	21.569	7.32e-08	53.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi7g01111	-		-	vvo:131628318	977.237

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