Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01069 ATGACGTCAAGACATGCTCTAACTGTCAATGATAAAAAATTATGGATGAAGTGCGCTGGTAACATACCCTTTGATCTCTCGATCAACGCGCTTGTATATTACTTACCAGAAGGAGATGCGGACAATGCTGGGAGATCCGAAGACCAGGAATTGAAAGATCGCTTAAGAAGCACCTATAAAAGCGCCTACCTATGTCAAATTTTATCGATCGAATATCTTGCAGATGCTGAATATGAAGAAGTATTCGCAAAGATACGGTTGAAAGCTGTCGAGGAAGATGAGTATCTTAATCCACTTGATGTTTTTGACAGGGCAGAAGACGATAATGGTTTTTTTGTGAAAACTCTTACCGACAATGACATTAACAAAGCCTTATATTTGCCAAAATCGACTTCGGGTGAGAACGGTGTTTTTCCTTCGTATGAAGCAAACTCAGAGTTGTCTCAGGACATTGTGCTAATTGATTTTGACGATAAACGTTGGAAACTTACCCATATCTCTCAGAAGGCAAAAGACTGTTTTGGGCTTGGAGCTGGATGGATCAAATTTGTTAAAGATAAAAAATTAACTTTAGGAGATACTGTCATTTTCAAAAAGAACTCTAATCCCTCAACAGTATCGGTTGCCTTCCAAAGGAAAGATTGTCCTTCTGCCAGAAAATATGGCTACATGATAGAAGATTACAGTTTGGAAGGATGTATTGTATCCCATGCAAGGAGTGCAGAAGCTAAAGAGGAGTTTACAGTCGTATACTTTCCGCATTGGATAGAGTTTTTAGTGCATCCGAATGTTTCATTTAGCTCAAAGGGGAAACTTGCTAAAAACATGAGGGTTAAGAAGTCAAATCCCCAAGGTACCGGCCGTAATTGTGTAGGCGGTTATTTGCAAATTCTTGGCGAAGCAAATGACCTTACATGGTCAATGTCAAAGGTTCATTGGGATGGCGAATGCATCGCATCGTGGGTCAACCATTGGCAGATCCAACCACTCGATGATCCGATTCCGGGAAGATTGAAGCATCGCATACCCAAACTTCGCCCTCGCAGATCAAACCCTTCGAAAAAAGCTCCAACACTGGAAACTTCATCCAACACTGAAGATGTGATCCCTGAATCTAACACTGGAGATGTGATCCCGATCCCTGAATCTAACACTGGAAATGGGATCCCTAACCCTGAATCCAACACTGGAGATAGGATCACTGAATCTGAATCCAACACTAGAGATGGGATCACTAAATCCAACACTAGAGATGGAGATGGGATCACTAAATCCAACACTGGAGATGGAGATGGGATCACTGAATCTGAATCCAACAGTGGAGATGGGATTTAA 1335 0.4157 MTSRHALTVNDKKLWMKCAGNIPFDLSINALVYYLPEGDADNAGRSEDQELKDRLRSTYKSAYLCQILSIEYLADAEYEEVFAKIRLKAVEEDEYLNPLDVFDRAEDDNGFFVKTLTDNDINKALYLPKSTSGENGVFPSYEANSELSQDIVLIDFDDKRWKLTHISQKAKDCFGLGAGWIKFVKDKKLTLGDTVIFKKNSNPSTVSVAFQRKDCPSARKYGYMIEDYSLEGCIVSHARSAEAKEEFTVVYFPHWIEFLVHPNVSFSSKGKLAKNMRVKKSNPQGTGRNCVGGYLQILGEANDLTWSMSKVHWDGECIASWVNHWQIQPLDDPIPGRLKHRIPKLRPRRSNPSKKAPTLETSSNTEDVIPESNTGDVIPIPESNTGNGIPNPESNTGDRITESESNTRDGITKSNTRDGDGITKSNTGDGDGITESESNSGDGI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01069 444 Gene3D - 103 218 IPR015300 -
Vivi7g01069 444 SMART B3_2 112 214 IPR003340 GO:0003677
Vivi7g01069 444 MobiDBLite consensus disorder prediction 416 444 - -
Vivi7g01069 444 ProSiteProfiles B3 DNA-binding domain profile. 110 214 IPR003340 GO:0003677
Vivi7g01069 444 Pfam B3 DNA binding domain 112 204 IPR003340 GO:0003677
Vivi7g01069 444 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 361 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi7g01069 444 MobiDBLite consensus disorder prediction 332 444 - -
Vivi7g01069 444 MobiDBLite consensus disorder prediction 354 401 - -
Vivi7g01069 444 CDD B3_DNA 111 205 IPR003340 GO:0003677
Vivi7g01069 444 SUPERFAMILY DNA-binding pseudobarrel domain 107 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01069 Vivi-Chr7 55820430 55824156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01069 11 202 B3 DNA Binding Superfamily AT4G30080 34.158 5.93e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi7g01069 B3 7.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01069 - K14486 vvo:131620598 912.524