Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01044 ATGCCTCCGCCGCCACTTCTGGTTCCTGAAGATGAAGGGCAGAGCAACCCCTCAACGGTAGCGTCTGCATCTCCACGATCCTTGGACTGTTTCTCCCAAACCGGAGCTGGATTGAAAGAGCGCAATTACCTTAGATTGTCTGATTGCTCATCAGTCGACAGTTCCGATGAGAAAAAGGTGAACCTGAATTTGAAAGCTACAGAGTTAAGGCTCGGCCTTCCTGGATCCCAGTCGCCTGAAAGGGATCTGGATCTTTTTTCTTTGAGCTCAACTAAGCTTGACGAGAAACCGCTCTTCCCTTTGGTTCCTACTAAAGATGGAATTTGCTCATTATCCCAGAAGAATGTGGTTTCCGGAAACAAAAGAGGTTTCGCCGACACAATGGATGTGTTCCCCGAGGCGAAATATAATAGTAATGCGCGTGTGAACATACTGCTATCGCCTAGACCTTCTACAGCTCAACCGACTACAGTTAAAGATATATCAAACAAAGTGTTACAAGAGAGCTCTTGTGCAGCAAATGGAACTGGAGCTCCCGTCAATGGCAGCGCACCGGCTTCTAAAGCACAAGTTGTCGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCATTGGCTACCACTTCTAAGAACAACGATGAAGTGGACGGTAAACCAGGTCCAGCTGCACTCTTTGTGAAGGTTAGCATGGACGGCGCTCCTTATCTTAGGAAGGTCGATTTAAGAAACTATACAGCGTACCAGGAACTCTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGCGGTTCTCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGTTGAAGGACTTCCTGCATGGTTCTGAATATGTCGTCACTTATGAAGATAAAGACGGTGACTGGATGCTTGTCGGAGATGTACCGTGGGACATGTTCACCGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGGGCTATGGAAAAATCCAAGAGCAGGAGCTAG 1032 0.4671 MPPPPLLVPEDEGQSNPSTVASASPRSLDCFSQTGAGLKERNYLRLSDCSSVDSSDEKKVNLNLKATELRLGLPGSQSPERDLDLFSLSSTKLDEKPLFPLVPTKDGICSLSQKNVVSGNKRGFADTMDVFPEAKYNSNARVNILLSPRPSTAQPTTVKDISNKVLQESSCAANGTGAPVNGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTAYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01044 343 SUPERFAMILY CAD & PB1 domains 221 324 - -
Vivi7g01044 343 MobiDBLite consensus disorder prediction 1 27 - -
Vivi7g01044 343 Pfam AUX/IAA family 67 334 IPR033389 -
Vivi7g01044 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 62 330 IPR003311 GO:0005634|GO:0006355
Vivi7g01044 343 ProSiteProfiles PB1 domain profile. 223 327 IPR000270 GO:0005515
Vivi7g01044 343 FunFam Auxin-responsive protein 218 335 - -
Vivi7g01044 343 Gene3D - 220 337 - -
Vivi7g01044 343 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01044 Vivi-Chr7 54829537 54832865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01044 227 333 B3 DNA Binding Superfamily AT4G23980 30.841 1.53e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi7g01044 AUX_IAA 3.3e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01044 K14484 - gmx:100500373 554.288