Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01015 ATGACAGATTACCGCTCACTCCCGACAATGAATAATAACATGTGGACAGACGAAAACTCCTCCGTCATGGAAGCTTTCATGAGCACCACCGACCTTTCATCTATCTGGCTTCCAACACCAAACTCTGCCGCATCAACCTCCGCCCCAGGACCCGACACAGCCAAACCTCCACCACAACAGCAGCCTCTCTTCAACCAAGAAACTCTCCAACACCGTCTTCAAGCTTTAATCGAAGACGCAAAAGAAAACTGGACCTACGCGATCTTCTGGCAAACCTCATACGACTACTCCACAAACCGACAGCTCCTCGGCTGGGGGGACGGTTATTACAAAGGCGAAGATGACAAAGAGAAAGCCAAAAAGGTTATCCTGCCTGAACAACAAGCTCACCGCAATAAAGTCCTCCGCGAACTCAACGCCTTAATATCCGGCTCGTCTGGCTCAGACGATGTCGTTGACGAAGATGTCACCGACACTGAGTGGTTCTTTCTCACGTCGATGACACACTCCTTCGTCAACGGCAGCGGTTTACTGAGCCAGGCTTACTTTAATTCTTCTCCAGTATGGATCACTGATAGGCTCTCCATGTCCACATGTGAAAGAACCCGTGCAGCACATGTCCATGGGTTTCAGAGTTTGGTATACATACCAGCACCATCTTCAAACGGCGTCGTTGAGCTTGCATCGACGGAGATAATTCCACATAGCGCTAATATAATGGAGAAGGTTCGTTTTCTGTTTGATTTCAATAATCCAGAAGCACGATCTTGGCCGTTGAATTCCGGTGATAACGATCCTTCTTCCATGTGGATGGATATCTCCGGCTCCGTTGGGAATGAAATTAGAGAAACAGTCAACACTGTTAGTGCCGTTAGTGTAACCGCTTCAGCAAATGCAACAATTACCAAAAAGCCGCAGTTTGAAATTCACGGTGCTTCTTCTACTCTACCGGAAACATCCACCGCCGTTAACCTTTCAACCTCTCAGCGCCAGAACCAGAATCAGAGTTTCTTTCCAAGGGAACTGAATTTTTCAGGTTCTTTAAAACCGGAATCCGGCGAGATTCTGAACTTCGGTGAGAGTAAAAAGAGTTCTTACAGCTCCGCCAATGGTAATTTCTTTTCCGGTCCGTCACCGTTCGCCGCCAACGACGAAAACAGAAAAAGAAATTCCCCGGTGTCTAGAAGTAGTATCGACGACGGAATTCTTTCATTCACTTCCGGCAAACTGTTACATGCTTCAGGTATAAAATCCGGCGGAGATTCCGATCATTCAGATCTGGAAGTCTCCGTGGTGAAGGAAACTATCAGCAGTCGAGCAATCGAACCAGAGAAGCGGCCACGGAAGCGAGGTAGAAAGCCTGCAAACGGAAGAGAAGAACCCTTGAACCACGTGGAAGCGGAGAGACAGAGACGAGAGAAACTGAATCAGAGATTCTACGCTTTACGCGCCGTGGTTCCGAATGTTTCTAAAATGGACAAAGCTTCGCTTCTTGGCGACGCGATTTCTTACATAAACGAATTGAAATCGAAGCTACAAGGGCTTGAATCATCGAAAGGTGACTTAGAGAAAGAACTAGATACAACAAGAAAGGAGCTAGAAATTGCTACCAAAAAACCAGTTCAGTTGAATGAAGAAAAAGAGAAAACAAACAACAACAACAACTCTAAGTTGATTGATTTGGACATAGATGTGAAAATCATGGGATGGGATGCGATGATTAGGATTCAATGTAGCAAGAAGAATCACCCTGCGGCGAAATTAATGGCGGCGTTAAAAGAATTGGATCTTGATGTGAATCATGCTAGTGTTTCTGTTGTTAATGACTTGATGATTCAACAGGCTTCTATTAACATGGGAAGTAGATTTTATACACAGGAACAACTTTTATCAGTTCTTACTTCCAAAATTGGTGATACACAATGA 1926 0.4528 MTDYRSLPTMNNNMWTDENSSVMEAFMSTTDLSSIWLPTPNSAASTSAPGPDTAKPPPQQQPLFNQETLQHRLQALIEDAKENWTYAIFWQTSYDYSTNRQLLGWGDGYYKGEDDKEKAKKVILPEQQAHRNKVLRELNALISGSSGSDDVVDEDVTDTEWFFLTSMTHSFVNGSGLLSQAYFNSSPVWITDRLSMSTCERTRAAHVHGFQSLVYIPAPSSNGVVELASTEIIPHSANIMEKVRFLFDFNNPEARSWPLNSGDNDPSSMWMDISGSVGNEIRETVNTVSAVSVTASANATITKKPQFEIHGASSTLPETSTAVNLSTSQRQNQNQSFFPRELNFSGSLKPESGEILNFGESKKSSYSSANGNFFSGPSPFAANDENRKRNSPVSRSSIDDGILSFTSGKLLHASGIKSGGDSDHSDLEVSVVKETISSRAIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKGDLEKELDTTRKELEIATKKPVQLNEEKEKTNNNNNSKLIDLDIDVKIMGWDAMIRIQCSKKNHPAAKLMAALKELDLDVNHASVSVVNDLMIQQASINMGSRFYTQEQLLSVLTSKIGDTQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01015 641 PANTHER MYC 46 636 IPR045084 GO:0003700|GO:0006355
Vivi7g01015 641 MobiDBLite consensus disorder prediction 38 62 - -
Vivi7g01015 641 Pfam Helix-loop-helix DNA-binding domain 463 508 IPR011598 GO:0046983
Vivi7g01015 641 CDD bHLH_AtAIB_like 456 532 - -
Vivi7g01015 641 Gene3D - 451 540 IPR036638 GO:0046983
Vivi7g01015 641 Coils Coil 505 539 - -
Vivi7g01015 641 MobiDBLite consensus disorder prediction 377 399 - -
Vivi7g01015 641 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 528 IPR036638 GO:0046983
Vivi7g01015 641 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Vivi7g01015 641 SMART finulus 465 514 IPR011598 GO:0046983
Vivi7g01015 641 MobiDBLite consensus disorder prediction 438 469 - -
Vivi7g01015 641 FunFam Transcription factor bHLH13 452 526 - -
Vivi7g01015 641 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 69 247 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01015 Vivi-Chr7 53745635 53748080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01015 1 638 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 50.901 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g01015 bHLH-MYC_N 8.5e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01015 K13422 - gmx:100790854 748.814