Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01011 ATGGCTTCTGATGGATTCACCGATAAGAATGTAGTGTTCAGAAAACTCAAATTGAAGTCTGAGAATAAGATGTGTTTCGATTGCAATACGAAGAATCCTACATGGGCGTCTGTTACGTATGGGATCTTTCTCTGCATTGATTGTTCTGCTGTTCATCGAAGTCTCGGCGTTCACATCAGTTTCGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTAAAAATAATGAGCTTTGGAGGAAACAGTCGTGCAACGACTTTCTTTAAGCAACATGGTTGGACCGATGGTGGTAAAATAGAAGCAAAGTATACATCTAGAGCTGCAGAGTTATACAGGCAAATTCTCGCAAAGGAAGTAGCTAAAAGTATGGTTGAGGAGGGAGGCTTGACTCCATCACCTATTGTTTCTCAGTCTTCTAACGGACTTCCTGAGATCAAGATCGATGAGGTACTGAAAGAAAGCACTATGGAGAAGGTAGAAAAGCCCGAGAGCACATCTTCACCTAGAGCTTCACATACAGTAATGTCTAATAATTTGAAGAAGCCTATTGGTGGGAAAAAGCCTGTGAAGGGTGGGGGACTTGGTGCTCGTAAGCTCAATAGAATGTCAAGTGAGAATCTCTATGAGCAGAAGCCTGAAGAACCACCTTCTCCAGTTCCATCCACAACAAACAACAGTTTGTCTACCAGGTCATCTCTGAGTTCTCGTTTTGAGTATGTAGATAATGTTCAATCACCTGATTTGGATTCTGGAAGTTCAAATGCATTCAATCATGTTTCTGCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATAGTGGTTTTCCCAAGAAATTTGGGTCAAGCACCTCAAAAGTCCAAATTGAGGAAACTGATGAAGCAAGAAAGAAGTTCTCAAATGCCAAATCTATTTCGTCATCTCAATATTTTGGAGACCAGAACAAGGCGAGAGATGCTGAGACTCGGGCTACTTTGTCAAAATTTTCAGGTTCATCTTCCATCTCTAGTGCTGATCTTTTTGGTGACAATGGAGACTCCACCATTGATCTTGCTGCCAGCGATCTCATCAATCGATTATCCTTTCAGGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACCGGGAAAAAACTCAGCTCCTTGGCCTCCTCTTTGATGACAGATCTTCAAGATCGAATACTCTAA 1206 0.4196 MASDGFTDKNVVFRKLKLKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKIMSFGGNSRATTFFKQHGWTDGGKIEAKYTSRAAELYRQILAKEVAKSMVEEGGLTPSPIVSQSSNGLPEIKIDEVLKESTMEKVEKPESTSSPRASHTVMSNNLKKPIGGKKPVKGGGLGARKLNRMSSENLYEQKPEEPPSPVPSTTNNSLSTRSSLSSRFEYVDNVQSPDLDSGSSNAFNHVSAPKSSSFFADFGMDSGFPKKFGSSTSKVQIEETDEARKKFSNAKSISSSQYFGDQNKARDAETRATLSKFSGSSSISSADLFGDNGDSTIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01011 401 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vivi7g01011 401 Pfam Putative GTPase activating protein for Arf 13 108 IPR001164 GO:0005096
Vivi7g01011 401 MobiDBLite consensus disorder prediction 154 234 - -
Vivi7g01011 401 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vivi7g01011 401 Gene3D Arf GTPase activating protein 3 135 IPR038508 -
Vivi7g01011 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vivi7g01011 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 401 - -
Vivi7g01011 401 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Vivi7g01011 401 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vivi7g01011 401 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vivi7g01011 401 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vivi7g01011 401 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01011 Vivi-Chr7 53557238 53561511 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01011 13 91 C2H2 Transcription Factor Family AT3G07940 46.250 3.20e-19 85.1