Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01008 ATGGCTTCCGACGGTTTCACCGACAAGAACGCCGTGTTCAGAAAACTCAAAACCAAATCCGAAAACAAGTCGTGCTTCGATTGTAATGCGAAGAATCCAACCTGGGCGTCAGTACCGTATGGGATCTTTCTCTGCATTGATTGCTCGGCCGTTCATCGGAGTCTCGGTGTTCACATCAGCTTCGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTTAAAATGATGAGCTTTGGCGGAAACGGTAGGGCAAGTGTTTTCTTTAGACAGCATGGTTGGAACGGCGATGGTAAAGTAGAGGCGAAGTATACATCCAGAGCTGCAGAGTTGTATAAGCAATTGCTTTCAAAAGAAGTTGCTAAAAGTATGGCTGAGGAGGCTGCCTTGTCTCCATCCCCTGCAACTGCTTCTCAGTCTGCCGAAGGGGATAATGGACTTCCTGATGTTAGGACCACCGAAGTCCCAACTGAAAAGACTTTGGAGAAACCAGAAAAGACTGAGAGCACTTCTTCACCTAGAGCTTCATATACTGCAGTTTCAAATAATTTGAAGAAGCCTCTTGGAGCAAAAAAAACTACTAAGAGTGGGGGGCTTGGAGCCCGTAAGCTCACTAGAAAGCCAAGTGAGTCTCTATATGAGCAGAAGCCCGAAGAAGCACCTGTGCCAGTTTCATCATCGACAAAGAACAACTTGCCTTCTGGGCCACCTCCAACATCTCGGTTTGAGTATACAGAAGATATCCAAACATCTGAGTTAAATTCTGGAGGTCATGTGTCTGCACCAAAGTCATCTAACTTCTTTTCAGACTTTGGAATGGGTAGTGGCTTACCAAAGAAATCTGGGCCTAGCTCCTCAAAAGTGCAAATTCAGGAAACTGATGAAGCAAGAAAGAAGTTCTCAAATGCCAAGTCTATTTCTTCATCCCAATTTTTTGGTGACCAGAGCAAGGCTGATGTGGATGCTCAAGCTACTTTATCAAAGTTTTCAGGTTCATCTGCTATATCCAGTGCCGATCTTTTTGGTGACTCAAGCGATAACAATGTCGATCTTGCTGCTAGTGATCTTATCAATCGAATATCTTTCCAGGCACAACAGGATATATCTTCCCTCAAGAACATTGCCGGAGAAACTGGGAAAAAGCTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATCCTCTAA 1200 0.4483 MASDGFTDKNAVFRKLKTKSENKSCFDCNAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNGRASVFFRQHGWNGDGKVEAKYTSRAAELYKQLLSKEVAKSMAEEAALSPSPATASQSAEGDNGLPDVRTTEVPTEKTLEKPEKTESTSSPRASYTAVSNNLKKPLGAKKTTKSGGLGARKLTRKPSESLYEQKPEEAPVPVSSSTKNNLPSGPPPTSRFEYTEDIQTSELNSGGHVSAPKSSNFFSDFGMGSGLPKKSGPSSSKVQIQETDEARKKFSNAKSISSSQFFGDQSKADVDAQATLSKFSGSSAISSADLFGDSSDNNVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01008 399 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vivi7g01008 399 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vivi7g01008 399 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vivi7g01008 399 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vivi7g01008 399 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vivi7g01008 399 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 399 - -
Vivi7g01008 399 MobiDBLite consensus disorder prediction 128 262 - -
Vivi7g01008 399 MobiDBLite consensus disorder prediction 133 147 - -
Vivi7g01008 399 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Vivi7g01008 399 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Vivi7g01008 399 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vivi7g01008 399 MobiDBLite consensus disorder prediction 156 170 - -
Vivi7g01008 399 MobiDBLite consensus disorder prediction 171 190 - -
Vivi7g01008 399 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
Vivi7g01008 399 MobiDBLite consensus disorder prediction 222 262 - -
Vivi7g01008 399 Pfam Putative GTPase activating protein for Arf 12 113 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01008 Vivi-Chr7 53491166 53497082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01008 13 90 C2H2 Transcription Factor Family AT4G21160 46.835 1.02e-19 87.8