Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g01000 ATGGCCCGACCCGATTATCCGACAACATGGATTCCTTACCTAAACAGTAAGGACTGTTCACAAGGTTTTTGTAGCATGTACTGTCCACAATGGTGCTACATAGTTTATCCTCCTCCTCCACCACCAACGTTTCAATACCCTGATGATGATTCAAAACCATATTTTTCTCCTCTTGTTATTGCTATCATGGGAATTTTAGCCACGGCTTTCCTGTTACTAACTTACTATACTCTAATATCCAAATACTGTGGTCGGAGAGAATCCTCGGGGAGAAATAGCACTGACCCGGTTGACGAATTCACGCAAAATCGGCGCGAAAACTGTCAAGTTTCGACTTTTGGCTTAGATGATGTTCAGATTAAGTCCATTGCAGTTTTCAAATACAGAAAAGGCGACGGTTTTTTTGTTGGTACTGTCACTGATTGTTCCGTTTGTTTAAGTGAGTTTCAAGATGATGAAAGTGTTAGGCTTTTACCAATGTGTAACCATGTTTTTCATCTTCCTTGTATCGACACATGGCTCAAATCGAACTCGTCTTGTCCTCTATGTCGCGCTAACATATTCACTTTGAATGCTTCAACACTGCATGTTTCAGTTCCAGTTCCGGCAACGGTTATTGAGTTTCCTGCAAGAAATGAAACTTTTTTAGAAGATGAGCAAATTGTTGTGGAAGAAACAAGGATGCATCATCATAGAAGAGTTGATTCGAAGGCGCTTTCGTTGCGCGCTTTTAGTGATTTGTGTAATTTGCAAGGTGGGAGAGAAAGAATAATTGAAATTAGAGATGAGGTGTGTAGGTCAGTTTCTATGGATCATTCACTTCAAAATGGTTTTTCAATTGGTGATGTGTTGAATATGAATGAAGATGGAGATTTTTGTGAAGAAGGATGTTCAATGGATTCATCAAAGAGACTAAGAGGAGAAAGTAGTAAGTCAAGGTACAAAAGAAAGGTGTTGCATTGTGTTAAGAGTCCAATTGCAATGAAGAGATCATTTTCTAGTGGAAGATTTTCACTTGGTAAAACAGATAGAGGAAGAAGAAACCATGAAATTTTCCCTGTTTGA 1065 0.3897 MARPDYPTTWIPYLNSKDCSQGFCSMYCPQWCYIVYPPPPPPTFQYPDDDSKPYFSPLVIAIMGILATAFLLLTYYTLISKYCGRRESSGRNSTDPVDEFTQNRRENCQVSTFGLDDVQIKSIAVFKYRKGDGFFVGTVTDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRANIFTLNASTLHVSVPVPATVIEFPARNETFLEDEQIVVEETRMHHHRRVDSKALSLRAFSDLCNLQGGRERIIEIRDEVCRSVSMDHSLQNGFSIGDVLNMNEDGDFCEEGCSMDSSKRLRGESSKSRYKRKVLHCVKSPIAMKRSFSSGRFSLGKTDRGRRNHEIFPV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g01000 354 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vivi7g01000 354 SUPERFAMILY RING/U-box 141 190 - -
Vivi7g01000 354 SMART ring_2 142 183 IPR001841 -
Vivi7g01000 354 FunFam E3 ubiquitin-protein ligase ATL6 103 189 - -
Vivi7g01000 354 PANTHER RING-H2 FINGER PROTEIN ATL16 42 348 IPR044600 GO:0016567|GO:0016740
Vivi7g01000 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 191 IPR013083 -
Vivi7g01000 354 CDD RING-H2_EL5-like 141 184 - -
Vivi7g01000 354 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g01000 Vivi-Chr7 53040488 53042064 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g01000 1 312 C3H Transcription Factor Family AT3G03550 40.120 8.65e-60 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g01000 - - vun:114176645 397.127