Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00992 ATGGATTACAACCGCGACGGCAACGTCGTTCAAATCATCACCGGCGGCGGCGGCGGTGCTGATAGCTGGTCGAGTGACCAAGCAGATTGGGCGACGGAAGACGAGTATCGCTACTGGAACGGAAACGAAGCCGGCGAAACCACTCCGTCATCGAACTCCAATTGCGAGCGTCAACAGCGTTCGGGAAGCGAGCCGCCGAACAAGAAATCGAGAAGCAGTTCGCAAGACGGAGGAAATGGCGGCGGCGGAGGCGGATCCAATCGAGCGAAAGCGATCGGGAAGATGTTCTTCAAGACGAAACTGTGCTGCAAGTTTCGAGTTGGGACTTGTCCTTACGTAACGAACTGTAATTTTGCTCACAGTGTTGAGGAGCTTCGTCGGCCGCCGGCGAATTGGCAGGAGATTGTGGCGGCGCATGAGGAGGAGAGGAACGTGCTGGAGCAGCCGAGGGAGGAGTTTCAGATTCCGACGGTTGGGTCGAGTACTTTTGTTGGGGAGAGTATGAATAATAGGTCGTATAAGGGTAGGCATTGTAAGAAGTTTTATACGGAGGAAGGGTGTCCTTATGGAGATAGTTGTACTTTTCTTCATGATGAGCAGTCGAAGAATCGCGAGAGTGTTGCGATAAGTTTGGGTCCTGGTGGTTATGGTGGTGGAGGTGGTGGTGGTGGTGGTGGAGGTAGTGCTGGTAGTGGCGGGGTTAGTGGGAGTGGTGTTGTTGTTGTTGCGGCGGGTGCTGCGGCGGCTGGGAATGGACCGAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGCCCATTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAGTTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAATCAGAGACGGTGTTTCTGTTGTTGCCTCTGATGCAAAACAGGGAGTATCTTCAAAAAATCACGCTGATAATGTGGTTGCATCAACTCCACCTATAGCTCATTCAGATGTTTATCATATTGGAGTCCCTTCACAGAGACCTTCCATTGTGAGTCAGCAGCCAGGACAGAGAGCTCATCATAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATACGGCGATTGGATCGACGACTTCGACTAG 1143 0.5083 MDYNRDGNVVQIITGGGGGADSWSSDQADWATEDEYRYWNGNEAGETTPSSNSNCERQQRSGSEPPNKKSRSSSQDGGNGGGGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYVTNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGSAGSGGVSGSGVVVVAAGAAAAGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGEIRDGVSVVASDAKQGVSSKNHADNVVASTPPIAHSDVYHIGVPSQRPSIVSQQPGQRAHHKWKGPDKISRIYGDWIDDFD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00992 380 SUPERFAMILY CCCH zinc finger 94 127 IPR036855 GO:0046872
Vivi7g00992 380 Gene3D - 164 211 - -
Vivi7g00992 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Vivi7g00992 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 285 IPR000571 GO:0046872
Vivi7g00992 380 Gene3D - 254 291 - -
Vivi7g00992 380 Gene3D - 93 127 - -
Vivi7g00992 380 MobiDBLite consensus disorder prediction 1 86 - -
Vivi7g00992 380 FunFam Zinc finger CCCH domain-containing protein 92 127 - -
Vivi7g00992 380 SUPERFAMILY CCCH zinc finger 169 200 IPR036855 GO:0046872
Vivi7g00992 380 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Vivi7g00992 380 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Vivi7g00992 380 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Vivi7g00992 380 FunFam Zinc finger, CCCH-type 165 204 - -
Vivi7g00992 380 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Vivi7g00992 380 SUPERFAMILY CCCH zinc finger 256 290 IPR036855 GO:0046872
Vivi7g00992 380 PANTHER CCCH ZINC FINGER/TIS11-RELATED 251 330 IPR045877 GO:0003729
Vivi7g00992 380 Pfam CCCH-type zinc finger 176 198 IPR041367 -
Vivi7g00992 380 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Vivi7g00992 380 MobiDBLite consensus disorder prediction 43 81 - -
Vivi7g00992 380 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Vivi7g00992 380 FunFam zinc finger CCCH domain-containing protein 15-like 254 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00992 Vivi-Chr7 52702643 52705576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00992 261 289 C3H Transcription Factor Family AT1G68200 62.069 3.83e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g00992 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00992 - - gmx:100788208 532.717