Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00987 ATGTCAAAACGTGGTTCAAGGGGGAGAAAAGTTCCATTGCTGAAGCTTTTCTCATTTGCTGACTTCTATGATTATGTCTTAATGGTTATTGGATCTGTTGGAGCATGCATTCATGGTGCATCTGTGCCTGTTTTCTTTATCTTCTTTGGAAAAATTATTAATGTCATTGGTTTGGCTTATCTTTTTCCCAAAGAAGCTTCTCACCAAGTTGCAGAGTATGCATTGGATTTTGTGTATCTAAGTATAGTAATATTGTTTTCATCATGGGCAGAGGTAGCATGTTGGATGCATACTGGAGAACGTCAAGCTGCAAAAATGAGAATGGCATATTTAAGATCAATGTTGAATCAAGACATAAGTCTTTTTGATACTGAACCATCAACTGGACAAGTTATTTCTTCTATTACAACTGACATCATATTTGTTCAAGAAGCATTATCCGAGAAGGTTGGGAACTTTATGCACTACATAAGCCGATTTATAGCCGGCTTTATAATCGGATTTTTCAAAGTTTGGCAAACAAGTTTAGTCACACTTGCTATTGTTCCATTGATTGCTATTGCTGGAGGTCTTTATGCATACGTCTCATTCGGTCTTATTGCAAAAGTTCGTAAATCGTATACACGAGCCCGTCAAATTGCTCAGGAGGTGTTAGGAAATGTGAGAACTGTACAAGCATTTGGAGGAGAACAAAGAGCAGTGATATCATACAAAGTAGCTTTGAGGAATACTTATAAGAATGGTAGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTTCTTTTTCTATCATGGGCTTTTCTTGTTTGGTTCACCAGCATTGTTGTTCACAAGGGTATTGCCAATGGTGGCGTCGCGTTTACTACTATGCTCAATGTTGTTATCTCCGGCCTGTCACTTGGGCAGGCAGCACCAGACATTTCTGCATTCGTTAGAGCAAAATCGGCAGCGTATCCTATTTTTGAGATGATAAATCGAGACAAAGTTAGACCAAAAACTGGCCGAAAATTAAGAAAAATAGACGGTCACATACAATTTATTAACGTATGTTTCAGTTATCCATCTCGTCCTGATGTAGTTATTTTCAACAATCTTTGTCATGAGATTCCTTCTGGTAAAATTTTGGCGCTTGTAGGAGGAAGTGGTTCAGGAAAAAGCACGATTATATCGCTAATTGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTATTAGATAGAAATGATATCAAAGAACTTGATCTAAAATGGCTTAGACATCAAATAGGACTAGTTAATCAAGAGCCTGCACTTTTCGCTACAACCATAAGGGAGAACATATTGTATGGTAAAAATGATGCCACGCCCGAAGAACTAAACCGCGCTTTGGAACTTTCTGATGCTCACTCTTTCATCAACAATCTTCCCGACGGATTAGATACTCAGGTTGGGGAGAGAGGGATACAATTATCAGGTGGACAAAAGCAAAGGATTGCGATATCTCGTGCTATAGTTAAGAATCCTTCGATCTTGTTATTAGATGAAGCAACTAGTGCTTTGGATGCGGAGTCTGAGAAAAGTGTACAAGAGGCTCTTGATCGTGTCATGATCGGTAGAACAACTGTGATAGTTGCACACAGGCTTTCTACGATTAGGAATGCAGATATGATAGCTGTTGTTAAAGAAGGGAGCATTGTGGAAACTGGAAATCACGAAGAGCTCATTTCCGACTCAAATAGTGTATATGTATCTCTTGTTCAAGGAAATCCTTCTTCGGATCGTTCCTTAGGACAATCATCAAGCATAAAGGACTCGAGAGAAACATCGCAAACATCAATTATCGGTGGTAGTTTTCGTTCGGATAAGGACTCTACTGGCCATGCGTGTGACGATGAAGCAGAAAGTATTGAAAAGCCGAGGCCTGTTTCATTAATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTACGGAGTTTTTGGAACCTTGGCTGCTTTTGTTACTGGTGCTCTTATGCCACTTTTTGCCCTTGGAATCTCTCATGCTCTTGTATCATACTATATGGATTGGGATAGCACACAACATGAAGTGAAAAAAATAGCTTTTCTCTTCTGTGGAGCAGCGATTTTAGCTATCACTGCTTATTCCATTGAACATCTTTCTTTTGGAATCATGGGAGAGCGACTTACACTACGCGTTAGAGAAATTATGCTTTCTGCTATTTTGAAGAATGAAATTGGTTGGTTTGATGATACAAGAAACACGAGTACCGTGCTTTCGTCACGTTTAGAGAGCGATGCGACTTTGTTAAAAACCATAGTGGTGGATCGTTCTACGATTCTCTTGCAGAATGTTGGTCTAGTTGTTACTGCATTTATCATTGCTTTCATTTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCTTTGATCATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGTAACCTAAGCAAAGCATATCTTAAAGCGAACATGTTAGCCGGGGAGGCTGTCAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATCATTGGCCTTTATGTTAACGAGCTCGTCGAGCCTTCCAAACGTTCGTTCAAACGAGGCCAAATCGCTGGCATATTTTATGGAATTTCTCAGTTCTTTATTTTCTCATCTTATGGCGTAGCCTTGTGGTATGGATCTGTGTTGATAGAAAAGGAGCTTTCTAGCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATAGTAACCGCACTGGCTATGGGGGAGACATTGGCACTTGCACCAGACCTTTTGAAGGGGAATCAAATGGTTTCATCGATTTTTGATATGATAGATAGAAAGTCAGGAATAGTACATGATGTTGGAGAAGACTTGGTGACAGTGGAAGGAACAATTGAGCTAAGAAAGATCAATTTTAGCTATCCGTCAAGACCGAACATTGTTATTTTCGATAATTTCAATCTAATGGTGCCTTCGGGGAAGAGTCTTGCCTTGGTTGGGCACAGTGGTTCCGGTAAAAGCTCAATAATCTCACTCATTCTTAGATTTTACGATCCAACTTCCGGAAAAGTGATGATTGACGGAAAAGACATCAAGGAAATGAATTTGAATTCGCTTCGGAAGCACATTGGTCTAGTACAACAAGAGCCAGCTCTATTTGCAACATCGATCTACAAGAACATTCTCTACGGAAAAGAAGAAGCATCTGAATCAGAAGTGATTGAAGCAGCGAAACTAGCCAATGCTCATAACTTCATCAGTGCACTACCTGAAGGCTACTCAACCAAAGCAGGAGAGAGAGGAGTTCAACTATCCGGTGGCCAAAAACAAAGAATAGCCATTGCAAGGGCTATTTTGAGAAACCCCGAAATATTACTTCTGGACGAAGCAACAAGCGCACTTGATGTAGAGTCGGAGCGCGTTGTGCAACAAGCTTTAGACAAGTTGATGCAAAATAGGACAACAGTTATTGTGGCACATAGGCTGTCCACAATAAGAAATGCAGATCAAATATCGGTTTTGCAGGATGGAAAGATTATTGAACAAGGTACTCATTCAAGTCTTATAGAGAATATAGATGGAGCTTATTTCAAACTAGCCAGCCTACAACAACAAACAGCTACATAA 3660 0.3962 MSKRGSRGRKVPLLKLFSFADFYDYVLMVIGSVGACIHGASVPVFFIFFGKIINVIGLAYLFPKEASHQVAEYALDFVYLSIVILFSSWAEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEPSTGQVISSITTDIIFVQEALSEKVGNFMHYISRFIAGFIIGFFKVWQTSLVTLAIVPLIAIAGGLYAYVSFGLIAKVRKSYTRARQIAQEVLGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWAFLVWFTSIVVHKGIANGGVAFTTMLNVVISGLSLGQAAPDISAFVRAKSAAYPIFEMINRDKVRPKTGRKLRKIDGHIQFINVCFSYPSRPDVVIFNNLCHEIPSGKILALVGGSGSGKSTIISLIERFYEPISGQILLDRNDIKELDLKWLRHQIGLVNQEPALFATTIRENILYGKNDATPEELNRALELSDAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVKEGSIVETGNHEELISDSNSVYVSLVQGNPSSDRSLGQSSSIKDSRETSQTSIIGGSFRSDKDSTGHACDDEAESIEKPRPVSLIRLYSMIGPYWSYGVFGTLAAFVTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAILAITAYSIEHLSFGIMGERLTLRVREIMLSAILKNEIGWFDDTRNTSTVLSSRLESDATLLKTIVVDRSTILLQNVGLVVTAFIIAFILNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYVNELVEPSKRSFKRGQIAGIFYGISQFFIFSSYGVALWYGSVLIEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIVHDVGEDLVTVEGTIELRKINFSYPSRPNIVIFDNFNLMVPSGKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKEMNLNSLRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPEGYSTKAGERGVQLSGGQKQRIAIARAILRNPEILLLDEATSALDVESERVVQQALDKLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENIDGAYFKLASLQQQTAT 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00987 1219 SMART AAA_5 1003 1195 IPR003593 GO:0016887
Vivi7g00987 1219 SMART AAA_5 376 568 IPR003593 GO:0016887
Vivi7g00987 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1214 IPR027417 -
Vivi7g00987 1219 CDD ABC_MTABC3_MDL1_MDL2 976 1214 - -
Vivi7g00987 1219 CDD ABC_6TM_Pgp_ABCB1_D2_like 646 961 - -
Vivi7g00987 1219 Gene3D - 974 1217 IPR027417 -
Vivi7g00987 1219 Gene3D ABC transporter type 1, transmembrane domain 945 973 IPR036640 GO:0005524|GO:0016020
Vivi7g00987 1219 Gene3D ABC transporter type 1, transmembrane domain 15 944 IPR036640 GO:0005524|GO:0016020
Vivi7g00987 1219 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 657 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g00987 1219 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 976 1212 IPR003439 GO:0005524
Vivi7g00987 1219 SUPERFAMILY ABC transporter transmembrane region 638 957 IPR036640 GO:0005524|GO:0016020
Vivi7g00987 1219 FunFam ABC transporter B family member 4 339 591 - -
Vivi7g00987 1219 ProSitePatterns ABC transporters family signature. 1115 1129 IPR017871 GO:0005524|GO:0016887
Vivi7g00987 1219 MobiDBLite consensus disorder prediction 587 631 - -
Vivi7g00987 1219 Pfam ABC transporter transmembrane region 658 929 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g00987 1219 Pfam ABC transporter transmembrane region 29 301 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g00987 1219 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 349 585 IPR003439 GO:0005524
Vivi7g00987 1219 FunFam ABC transporter B family member 19 966 1215 - -
Vivi7g00987 1219 MobiDBLite consensus disorder prediction 587 617 - -
Vivi7g00987 1219 CDD ABC_MTABC3_MDL1_MDL2 349 585 - -
Vivi7g00987 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 584 IPR027417 -
Vivi7g00987 1219 Pfam ABC transporter 368 516 IPR003439 GO:0005524
Vivi7g00987 1219 SUPERFAMILY ABC transporter transmembrane region 16 322 IPR036640 GO:0005524|GO:0016020
Vivi7g00987 1219 ProSitePatterns ABC transporters family signature. 488 502 IPR017871 GO:0005524|GO:0016887
Vivi7g00987 1219 Pfam ABC transporter 995 1143 IPR003439 GO:0005524
Vivi7g00987 1219 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 325 - -
Vivi7g00987 1219 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi7g00987 1219 Gene3D - 339 601 IPR027417 -
Vivi7g00987 1219 PANTHER ABC TRANSPORTER B FAMILY 8 585 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00987 Vivi-Chr7 52610667 52617181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00987 9 1219 Calmodulin-binding Proteins AT2G36910 49.880 0.0 1193