Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00972 ATGAGCTTCCAGGACATCGAATCTGGCCGCCCGTTCAGACGTGGACCGATCAACGGAAAGCAAGACCCGACGCAGGCCGTGGCTGCCGGTATTTTTCAGATCAATACTGCCGTTTCCACTTTTCAGAGACTCGTTAATACCGTTGGAACACCCAAAGATACCCCTGACCTCCGTGAAAAGCTTCACAAGACCAGACAACATATTGGGCAGTTGGTGAAGGATACTTCAGCTAAGCTTAAACAGGCTAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAAATAGCAGATGCTAAACTCGCGAAAGATTTTCAAGCAGTCTTGAAAGAGTTTCAGAAGGCACAACGGCTTTCAGCGGAGAAGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAATGCTTCCTTCTAGCTATACTGCCAGTGAAATGGATATTGGCTCTGATAAGACACCAGAACAGCGTGCCCTTCTTGTCGAATCCAGGAGGCAGGAGGTTTTATTCCTAGATAATGAGATTGCCTTCAATGAGGCAATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAAATTTTCAAAGATCTCGCTGTGCTTGTCCATGAACAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAATTCGCATGCTGCAACCGCACAAGCAAAAACTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAACTCATCTCTGGCATGCTTGCTTTTGGTGATATTTGGGATTGTGCTTCTCATAGTGATCATAGTTCTTGCTGCTTAA 816 0.44 MSFQDIESGRPFRRGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTVGTPKDTPDLREKLHKTRQHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLSAEKETAYTPFVPQAMLPSSYTASEMDIGSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKTQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00972 271 Gene3D - 18 131 - -
Vivi7g00972 271 ProSitePatterns Syntaxin / epimorphin family signature. 184 223 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi7g00972 271 MobiDBLite consensus disorder prediction 1 22 - -
Vivi7g00972 271 Pfam Syntaxin-like protein 28 127 IPR006011 GO:0016020
Vivi7g00972 271 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 178 240 IPR000727 -
Vivi7g00972 271 CDD SynN 21 146 IPR006011 GO:0016020
Vivi7g00972 271 CDD SNARE_Qa 198 239 - -
Vivi7g00972 271 SMART SynN_4 13 125 IPR006011 GO:0016020
Vivi7g00972 271 Gene3D - 172 271 - -
Vivi7g00972 271 PANTHER SYNTAXIN 24 263 IPR045242 -
Vivi7g00972 271 FunFam Syntaxin-22 like 18 131 - -
Vivi7g00972 271 SMART tSNARE_6 173 240 IPR000727 -
Vivi7g00972 271 FunFam Syntaxin-22 like 171 271 - -
Vivi7g00972 271 Pfam SNARE domain 214 266 IPR000727 -
Vivi7g00972 271 SUPERFAMILY t-snare proteins 21 233 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00972 Vivi-Chr7 52052008 52055957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00972 1 259 SNARE and Associated Proteins AT5G46860 76.538 9.42e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00972 - - gmx:547656 412.535