Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00901 ATGAGTGAGAGAGAAGAGTTTGAGGTAGATGGACAAAAGGGTCCTTTGGATTGGAGGTTTGTGAGTGGCAATCTTGTAAATTCTATGATGGGTTTGGTTTCTATGGAAAATTCTATGATGGGTTGTTCTCCTTCATGTTCTAACTCAATGGTGGATTCATTTGGTCCTAACTTTTTGGACCTTGCTTCCAATTCTGAAAGCTTTGCTTTTTGTGATGTTAATGGCCACAGTAATGGAAATGGAAAAGATGGGTTAAGTTTTGCAAGAGATGGTTGTGATATTGATGATGGTAGAACACTAGGATTTGGATGGAACCTTGCTGGTTCTATGATGAATAAGGTTGGTGTTTTACCAAATGGACCTGAGATGTTTCCTCAAAATTTGTCTCAGTTTCCAACTGATTCTGAGTTTATTGATGCTGCACGAATGTCGTGCTTAAGTGCCGGGGGTTTTGGAGATACGGTTAACTCGTGTAGGATTCCTCAATATATGGCTCTACACGTGCCTCGATCTGTTGAGCATCCTAGATGTGATGGAAGTCTTGAAAATGATGGAAGAAGTGATTGTCCTGTAATGTCTCTGGATGAAGGGAAACAAGCACTTGGAGGGTCTTGTAATGAAGCTGATAGAGTCGAGTCTAGCGGTGAGGGTGATGATGGGGTTGCCATTGGTAGCCATGTTGGTTCCCAAATGTTGGATTGTACAAGTGGAGAACCTTCTATTAAAGGTCTAAACCGAAAGAAAAGGAAAACAAGTAGGCAGGATGGTGAGTGCGACAAAGCCACCGGAACTATTGAGCTGCCTAGGGAAACTGCAAAGGACAACTGTAAGAGTCGACGGCAGAAGGGAGAGAAGCAGCCAACTTCAACAACCAAGGATTCCGGGAAGAATGCTAAACAGGGGTCTCAAGCTTCTTATCTGCCTAACGAGGGATACGTACATGTTAGGGCTCGCCGCGGTCAAGCGACAAACAGTCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGTAGCAAGATCACTGGCAAGGCATTGATGCTAGATGAAATCATAAACTATGTACAGTCTCTTCAGCAACAAGTTGAGTTTTTATCAATGAAACTCGCAACAGTGAATTCACACGTGGATTTCGATATGGAACGGCTGCTTCCTAAAGACATTCTTCAACATCGACATGTTCCGTCGTCATCTGCACCGGGGTTTCTAACAGAAATGCCAATGACTTTTCCTCCATTATTACATCCATCTCAACCAGGACTGATTCGTTCGTCTCCACCTAACATGGCTAATCCATCCGATATACTTGGGCGGAGCGTGGAACCACAATTCACACCCCTGACTGAAGAATTTAAAGAGCCAGATCAGGTTAATCCATTGCAAGAAGCCAAGCACTGA 1437 0.4356 MSEREEFEVDGQKGPLDWRFVSGNLVNSMMGLVSMENSMMGCSPSCSNSMVDSFGPNFLDLASNSESFAFCDVNGHSNGNGKDGLSFARDGCDIDDGRTLGFGWNLAGSMMNKVGVLPNGPEMFPQNLSQFPTDSEFIDAARMSCLSAGGFGDTVNSCRIPQYMALHVPRSVEHPRCDGSLENDGRSDCPVMSLDEGKQALGGSCNEADRVESSGEGDDGVAIGSHVGSQMLDCTSGEPSIKGLNRKKRKTSRQDGECDKATGTIELPRETAKDNCKSRRQKGEKQPTSTTKDSGKNAKQGSQASYLPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKITGKALMLDEIINYVQSLQQQVEFLSMKLATVNSHVDFDMERLLPKDILQHRHVPSSSAPGFLTEMPMTFPPLLHPSQPGLIRSSPPNMANPSDILGRSVEPQFTPLTEEFKEPDQVNPLQEAKH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00901 478 MobiDBLite consensus disorder prediction 242 289 - -
Vivi7g00901 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 389 IPR036638 GO:0046983
Vivi7g00901 478 SMART finulus 327 377 IPR011598 GO:0046983
Vivi7g00901 478 MobiDBLite consensus disorder prediction 200 308 - -
Vivi7g00901 478 Pfam Helix-loop-helix DNA-binding domain 324 372 IPR011598 GO:0046983
Vivi7g00901 478 CDD bHLH_AtBPE_like 311 396 - -
Vivi7g00901 478 Gene3D - 318 392 IPR036638 GO:0046983
Vivi7g00901 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
Vivi7g00901 478 MobiDBLite consensus disorder prediction 442 478 - -
Vivi7g00901 478 MobiDBLite consensus disorder prediction 290 307 - -
Vivi7g00901 478 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 230 418 IPR024097 GO:0006355
Vivi7g00901 478 FunFam Basic helix-loop-helix transcription factor 318 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00901 Vivi-Chr7 49875144 49878555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00901 17 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 39.362 1.14e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g00901 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00901 - - tpra:123921399 654.44