Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00873 ATGGCTGAAAAACACCACAAAAACAAAAAAAAAAATCTACCAATTTCAACTTCAAATCTCAATGATCCCAAGAAACAATTAAACAAGGAAAATCATGACAAAGATTTAGAATCACTGCCGGAGCCCGATCCTCCGATAAGTTTACCGGCAGTCTCCTCGCCGGACCACACACCGTCGCTGCCTCGGCCAAAGTCTCCTCTGCCGCCTAAAGTATTACCGCCGTTTGAATCACCTTCAGAACCACCACCAACACCGTCACCACCACCATCACCACCACCATCATCATCGCCACCACCTCCAGAACCTTCACCGCCACCTCCAGAACCTTCATTGCCACCTCCAGAACCTTCTCCTCCACCTCCGTCATTATCCCCACCGCCACCACAATTATCACCTCCGCCGGTGCACAATGCAAACTCCTCAATATCTCCTCCTCGTTCATCGCATAAACAACCACCTCCCTCGCCTCCTGAGAGGCCATCTTCATCATCTTCATCATCTTCTTCGTCTTCTACGCCGTCGAATGATTCGCCACATAAAGCTATGCATGAAAAATCAAGAGACTCTCATTCGCCTGCATCCTCGCCCGTCGAAATAGTTGGTTATACCCTGGCCGGAGTTTTGGTTGTCTCCTTAGTTGTCTTCGCCGTTTTTCTCACTTTTAGGAAGAAGAAAACGAAAGGAGATGCTTATGGCGGAGCCTTTATGCCACCTCCTGGAACTAACTTTCAGGTTAAATCAGGTGCTGATGGGCTTTACTATGTACAGCAACCTTCCTTTAGAAATAACTATGCCAAAGGGAACGCAGGAGCAAACAGCAAGAAGCATTTACGACGAGGTTCTATGGAATCTGTACAGCCCCTGAGTGCTCAAGTAGTTTTTAGTTATGACATGGTAAAAGAAATAACCAATGCATTTTCTAGTCAGAATGTGATAGGGGAAGGGGGATTTGGGTGTGTTTACAAGGGTCGGCTTATGGATGGAAAAGATGTGGCAGTCAAGCAACTTAAAGTTGGTAGTGGGCAGGGAGATAGGGAATTCAGGGCAGAAGTGGAGATTATTAGCCGAGTTCATCATCGGCATTTGGTATCGTTGGTTGGTTATTGCATTTCTGAGCAGCAAAGAATGCTTATATATGAGTTCGTTCCTAATGGAAATCTTCATCATCACTTGCATGGAAGTGGAGTGCCAGTGTTGGATTGGGCCAAGAGGCTGAAGATAGCTATTGGTGCTGCAAAGGGTCTGGCGTATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAATCACCCAACATACTTCTGGATGATGCTTTTGAGGCACAGGTTGCAGACTTTGGGCTTGCAAGGCTAACAGATGCTGCCAATACCCATGTATCAACAAGGGTTATGGGTACCTTTGGGTACATGGCTCCAGAATATGCAACCAGTGGAAAATTAACAGATAAATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACCGGAAGGAAACCGATTGATGAAACCCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTACTGATCCACGCCTTTATGACACGCGAGTTTGGTGAACTAGTAGATCCGAGACTAGAAAATAACTACGTAGAGAGTGAAATGTTCGGAATGATAGAAGCAGCCGCAGCATGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTCTCAGGTGGTAAGAGCTTTAGACAGTGGAGACGACATATCTGATTTATCAAACGGGGTGACATACGGTCAGAGCACTGTCTATGATTCTGGCCAGTACGACAAAGAGATCATGCTATTCAGGAGAATGGCCAATGAAAGCTATGGTGATTCTGATCTTGATAAAAACAGTGGAGAATCCAATCCTTCGAAAGAGAATTTGAGATCACAGCATTCATGGATGCACAGTACTTCGAGTACCGAGTCAGAATCAAGAGCTTTCAATAAGCATAAAGTCAGTCATGAATGA 2004 0.4571 MAEKHHKNKKKNLPISTSNLNDPKKQLNKENHDKDLESLPEPDPPISLPAVSSPDHTPSLPRPKSPLPPKVLPPFESPSEPPPTPSPPPSPPPSSSPPPPEPSPPPPEPSLPPPEPSPPPPSLSPPPPQLSPPPVHNANSSISPPRSSHKQPPPSPPERPSSSSSSSSSSSTPSNDSPHKAMHEKSRDSHSPASSPVEIVGYTLAGVLVVSLVVFAVFLTFRKKKTKGDAYGGAFMPPPGTNFQVKSGADGLYYVQQPSFRNNYAKGNAGANSKKHLRRGSMESVQPLSAQVVFSYDMVKEITNAFSSQNVIGEGGFGCVYKGRLMDGKDVAVKQLKVGSGQGDREFRAEVEIISRVHHRHLVSLVGYCISEQQRMLIYEFVPNGNLHHHLHGSGVPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSPNILLDDAFEAQVADFGLARLTDAANTHVSTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELVTGRKPIDETQPLGDESLVEWARPLLIHAFMTREFGELVDPRLENNYVESEMFGMIEAAAACVRHSAPKRPRMSQVVRALDSGDDISDLSNGVTYGQSTVYDSGQYDKEIMLFRRMANESYGDSDLDKNSGESNPSKENLRSQHSWMHSTSSTESESRAFNKHKVSHE 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00873 667 Gene3D Phosphorylase Kinase; domain 1 267 381 - -
Vivi7g00873 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vivi7g00873 667 FunFam proline-rich receptor-like protein kinase PERK8 382 594 - -
Vivi7g00873 667 PRINTS Proline rich extensin signature 100 125 - -
Vivi7g00873 667 PRINTS Proline rich extensin signature 33 54 - -
Vivi7g00873 667 PRINTS Proline rich extensin signature 62 78 - -
Vivi7g00873 667 PRINTS Proline rich extensin signature 79 96 - -
Vivi7g00873 667 MobiDBLite consensus disorder prediction 1 194 - -
Vivi7g00873 667 CDD STKc_IRAK 312 580 - -
Vivi7g00873 667 Gene3D Transferase(Phosphotransferase) domain 1 382 592 - -
Vivi7g00873 667 SUPERFAMILY Protein kinase-like (PK-like) 284 579 IPR011009 -
Vivi7g00873 667 MobiDBLite consensus disorder prediction 59 134 - -
Vivi7g00873 667 FunFam Proline-rich receptor-like protein kinase PERK8 278 381 - -
Vivi7g00873 667 SMART serkin_6 306 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00873 667 MobiDBLite consensus disorder prediction 634 655 - -
Vivi7g00873 667 ProSiteProfiles Protein kinase domain profile. 306 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi7g00873 667 MobiDBLite consensus disorder prediction 621 667 - -
Vivi7g00873 667 Pfam Protein tyrosine and serine/threonine kinase 309 578 IPR001245 GO:0004672|GO:0006468
Vivi7g00873 667 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Vivi7g00873 667 MobiDBLite consensus disorder prediction 161 177 - -
Vivi7g00873 667 MobiDBLite consensus disorder prediction 25 40 - -
Vivi7g00873 667 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 207 628 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00873 Vivi-Chr7 48658930 48664208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00873 199 616 Trihelix Transcription Factor Family AT1G70460 64.138 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi7g00873 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00873 - - gmx:100797563 643.654