Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00871 ATGGATGTTGTTGAATTACTTAGACCCTTTGTTGAGACTAAAGCTTGGGACTATGTTGTTGTTTGGAAATATGGAAATGACCCAACTAGTTTTATTGAATGGATGGGTTGTTGTTGTTGTGGTGGCAACATTGAGAAGGTGAAGATCAAAAAAGAGGAATACAAGATGGCTCCCATTTGTAGGGATACCCTCTTTCCCCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCAAAGCTTCCTTTTGCAATGTCTCTTTATTCTAGGTCTCTCTCTCACTCCCTCTCATTTGTTCATGGAGAGGTTGCAATTTCACAACAACCAATATGGCATATCCAGGAGGACTCAATTGGAACTCAAGTTTTGATTCCTATTTTGGGTGGTCTTGTGGAGCTCTTCACTTCAAAGCTGATAGCAAAAGATATAAACATCATCGAGTTCATATCAGCACACTGCTGTGTCCCTATAAAGCAAGAAGCCATGTCTGCACAGAGCTATACCAACATGAACTTCAATGAGCATTATTACCCTTCTCCCGGTCTATCTGCAGAAAACCATAGCAGCTCTAATCCAAGCATTGAAGGACCCTCCAATGGATCTAATCCTTCAACAGAATACTTCTCATTTGATTCAAAATTTGATTGCTTGGTTCCACATGAATGTCTGAATCAACCGGTTGAAATATCTCCTATACTAAAAGTTAAAAGCCGCGGGTACAATAAAACTAAGAGTTTCCATTATGGAAATGGCGAAGAAGTTAAAGTAGAAACTGTTAAGGAGCCTCAAAAGGAAATGTATCATGCTAAAAATCTTATCACAGAGAGGAATAGGAGGAAAAGAATTAAACAGGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACCAAGATGGATAGAGCAGCAATTGTGGATGATGCAATTGAATACATAAAGGAATTGCAGAGGCAAAAGATAGAACTTCAAGAAAAGGTTGATGTTTTAGATGTTGAGGATTGTAAAAAGAACACACTACAAATGAAGGTGCAAGGAGACAAAGAACAACCTCTCAGTGAGCTTCATCAAAGTTCTTTTGATTCCATTAGAAAGACACAAATGGAGTTGCAAGTAGAAGTGAATCATGTTCGCGGAACAGAATTCATGATCAAGTTGTGCTGTGAAATGAAGCGGAGTGGGTTTTCAGAGTTGATGGAAGCAATAGATTCATTTGGACTGCATGTGACAACTGCCAAGGATATTCACCCGACAAAACTCAGAGAGTATTTGATACAGAAGACAAGTTGA 1284 0.3902 MDVVELLRPFVETKAWDYVVVWKYGNDPTSFIEWMGCCCCGGNIEKVKIKKEEYKMAPICRDTLFPHPVRTKTCEALAKLPFAMSLYSRSLSHSLSFVHGEVAISQQPIWHIQEDSIGTQVLIPILGGLVELFTSKLIAKDINIIEFISAHCCVPIKQEAMSAQSYTNMNFNEHYYPSPGLSAENHSSSNPSIEGPSNGSNPSTEYFSFDSKFDCLVPHECLNQPVEISPILKVKSRGYNKTKSFHYGNGEEVKVETVKEPQKEMYHAKNLITERNRRKRIKQGLFTLRSLVPNITKMDRAAIVDDAIEYIKELQRQKIELQEKVDVLDVEDCKKNTLQMKVQGDKEQPLSELHQSSFDSIRKTQMELQVEVNHVRGTEFMIKLCCEMKRSGFSELMEAIDSFGLHVTTAKDIHPTKLREYLIQKTS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00871 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Vivi7g00871 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 328 IPR036638 GO:0046983
Vivi7g00871 427 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 136 410 - -
Vivi7g00871 427 SMART finulus 271 320 IPR011598 GO:0046983
Vivi7g00871 427 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 149 IPR025610 -
Vivi7g00871 427 MobiDBLite consensus disorder prediction 181 201 - -
Vivi7g00871 427 Gene3D - 255 331 IPR036638 GO:0046983
Vivi7g00871 427 Pfam Helix-loop-helix DNA-binding domain 272 315 IPR011598 GO:0046983
Vivi7g00871 427 Coils Coil 304 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00871 Vivi-Chr7 48574049 48576314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00871 267 411 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 40.491 3.36e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi7g00871 bHLH-MYC_N 8.8e-13 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00871 - - psat:127075085 704.131