Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00846 ATGATGAAGAGACAGAGAGAAAAAGAAGAAGAAAAAGAGAGCATGAATTTAGCAACAAATCTAAAGTTACTCTCTTCATATCGTACCCATCAACACCAAAAGAACAAAACATATTTTCAAGATCAGTTTGAGTGCAAAACATGCAACCGCAAATTCTCATCTTATCAAGCACTTGGTGGTCACAGGACAAGTCACAAGAAACTCAAACTTGAAGGAGATGAAACAGTACTCAAAGGGTATGATCATACAAATAAGCAACCAAAAATGCATAAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGCGGACATATGAGAAGGCATAAAATTAATAATGAAGGGTTTTCCTCATCTTGTATGAATTATCAAGTGATAGCAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGTAAAAGAGTGATGTGTTTAGAATTGGACTTGAATTTGACACCTTTAGAAAATGACTTGAAGTTCTTGTTTGGAAATAAGGCGCCTCAAGTAGATCACTCTTTATTTTGA 531 0.3465 MMKRQREKEEEKESMNLATNLKLLSSYRTHQHQKNKTYFQDQFECKTCNRKFSSYQALGGHRTSHKKLKLEGDETVLKGYDHTNKQPKMHKCSICGQEFKLGQALGGHMRRHKINNEGFSSSCMNYQVIAKSSPVLKRSNSKRVMCLELDLNLTPLENDLKFLFGNKAPQVDHSLF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00846 176 PANTHER ZINC FINGER PROTEIN ZAT5 5 159 - -
Vivi7g00846 176 Gene3D Classic Zinc Finger 41 112 - -
Vivi7g00846 176 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Vivi7g00846 176 SUPERFAMILY beta-beta-alpha zinc fingers 42 112 IPR036236 -
Vivi7g00846 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Vivi7g00846 176 SMART c2h2final6 90 112 IPR013087 -
Vivi7g00846 176 SMART c2h2final6 43 65 IPR013087 -
Vivi7g00846 176 Pfam C2H2-type zinc finger 90 113 - -
Vivi7g00846 176 Pfam C2H2-type zinc finger 43 67 - -
Vivi7g00846 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Vivi7g00846 176 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00846 Vivi-Chr7 47714402 47715116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00846 2 172 C2H2 Transcription Factor Family AT3G53600 46.154 2.87e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi7g00846 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00846 - - cam:101495964 220.705