Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00843 ATGAGAATGACCCCTTCAATTATCTTCATCATAGTAATTTTAGCTATTGTGTTTTTCATCTCTGGTGTCCTCCAACTGTTTGTTAGATTTCTCATACGAAAAAGATCTTCTTTAAGAGCTTCACAGTCCAATAATAATGGCAACCCTCAAATTTCTGAACCTGATCCTTATCAGAGACAGTTGCAACAGCTCTTCAATCTCCATGATTCGGGTTTAGATCAAGCTTTCATTGATGCTCTACCGGTTTTTATGTACAAGGAGATAATAGGTTTGAAAGAGGTGTTTGATTGTGCTGTTTGTCTTTGTCAGTTTACTGAACAAGATATGTTGAGATTGTTGCCTCTTTGTAATCATGCTTTTCATATTGATTGCATAGATACATGGCTGCTTTCCAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAACATGGATTTGCTTTCGAAAATCCGGTTTATGATGAATTTGAGAGTCTGAGTGAAGAAAATATGGTTGTTGGTGAGGGTAACTCTGTTAACAAACATGCAGAGAATCATATAATGAGTGGGAAAAGGGTTTTTTCTGTTAGGCTTGGGAAATTTAGAAGCTCAAATAATGGAGAAGGGGGTGTGGAAAAAGGTGAAGGAGAGTGTAGTAGTGAAAGTGTTGTTGGTGATGTTAGGAGATGCTTTTCAATGGGTTCTTACCAATATGTAGTTGCTGATTCAGATTTGGTAGTGGCTTTGTGTCCAAAGAGAGGTGAAGGAAGAGGAAAGAGTGCTAGTATGAGACATTTGAAAGGAGGGCTTGTTCAAAATGGGAATTGTTCCATTGATGTGGATGTTGTTGAAGGGAAAAAGATGAATGTTGCTAGGAAAGGTGAAAGCTTTTCTATTTCAAAGATTTGGTTGTGGTCTAGGAAGGATAAGGTATCAAGTTCATCACAATCCCATTTGGTTAATTCTAATGTCACTTCAACTTTGCCATGGATGAATAGAGAACTCAAGGAAGCAACTTAG 1002 0.3762 MRMTPSIIFIIVILAIVFFISGVLQLFVRFLIRKRSSLRASQSNNNGNPQISEPDPYQRQLQQLFNLHDSGLDQAFIDALPVFMYKEIIGLKEVFDCAVCLCQFTEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEHGFAFENPVYDEFESLSEENMVVGEGNSVNKHAENHIMSGKRVFSVRLGKFRSSNNGEGGVEKGEGECSSESVVGDVRRCFSMGSYQYVVADSDLVVALCPKRGEGRGKSASMRHLKGGLVQNGNCSIDVDVVEGKKMNVARKGESFSISKIWLWSRKDKVSSSSQSHLVNSNVTSTLPWMNRELKEAT 333
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00843 333 CDD RING-H2_EL5-like 96 139 - -
Vivi7g00843 333 FunFam RING-H2 finger protein ATL46 59 144 - -
Vivi7g00843 333 Pfam Ring finger domain 96 139 IPR001841 -
Vivi7g00843 333 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vivi7g00843 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Vivi7g00843 333 SMART ring_2 97 138 IPR001841 -
Vivi7g00843 333 SUPERFAMILY RING/U-box 76 145 - -
Vivi7g00843 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 297 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi7g00843 Vivi-Chr7 47638574 47640042 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00843 2 309 C3H Transcription Factor Family AT2G18650 40.950 1.10e-58 193