Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00825 ATGGGTGAACTGGGTGGTTTCGGTGAGTGGAGCAAAGAGCAAGATATGGCATTTGAAAATGCGTTGGCGAATTATCCTGAGGACGCTGTGGATCGATGGGCGAAAATTGCGGCAGTTGTAGCTGGGAAAACTTCGGAAGAGGTTAAGCGTCACTATGAGGTTTTGGTTGAGGATGTCAGCCTCATTGAATCTGGTTATGTGGCTTTACCGGGTTATGATTCTCCTCCGGAGGCGGAGAGATCAACAAAGCGTGCTCGTGGAAAAGGAGTTGTCAAGAAGGGAGCTAGTGGGTCAAAACCTGAGCCAGAACGGCGAAAGGGTATTCCTTGGACCGAAGAGGAACACAGGTTATTTCTTATAGGCTTGGAGAAGTATGGAGATGGTGACTGGCGGAGCATATCAAGGAGATGTGTGGTGACAAGAACACCTACACAAGTTGCTAGCCATGCTCAGAAATACAAAATTCGTCTGAAATCAATGAATGAGAGGAAAGACAAAAGAAGGCGATCCAGCATACATGATATCACCCTTGAGAAAAGTGTAGACATTCCAGGACCTCAAGTACCAATTACTGGTCAATCAAGCGATCCTGCAGCAAGTTCGGCCGGAGAATCAGCCACACAAGTTCCTCCAGGCCCAGCTACTGAAATGATTGCTGCAGCTGCACCTGCACCTGCACCTGCTGGAATGAATGCTGCAGCCCCACCTGCTGAAATGAATGCTGCAGCCGCACCTGCCGGAATCAGAACTTTAGATATTCCTCCGGCCCCACCTGCCGGAATCAGAACTGTTGATAAACTTCCTGCCCCACCTGCCAAAGTTTGTGCTGCTCCTGGGATCTGGCAACCTGTAGGAGGACCGGTTGTATCTGCAGATGGCACTCCAGTGAATCAAACTGCTTCTGGTCACACGGCATATGGTCATATGCCGGTTTCTGGGACAGCTATTCAAGAGGCACCAATGAACTTTAGTTCTCTGAAATATCTCATGAAACATACATCTACTCGCTCGTGA 1014 0.4892 MGELGGFGEWSKEQDMAFENALANYPEDAVDRWAKIAAVVAGKTSEEVKRHYEVLVEDVSLIESGYVALPGYDSPPEAERSTKRARGKGVVKKGASGSKPEPERRKGIPWTEEEHRLFLIGLEKYGDGDWRSISRRCVVTRTPTQVASHAQKYKIRLKSMNERKDKRRRSSIHDITLEKSVDIPGPQVPITGQSSDPAASSAGESATQVPPGPATEMIAAAAPAPAPAGMNAAAPPAEMNAAAAPAGIRTLDIPPAPPAGIRTVDKLPAPPAKVCAAPGIWQPVGGPVVSADGTPVNQTASGHTAYGHMPVSGTAIQEAPMNFSSLKYLMKHTSTRS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00825 337 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 215 IPR043363 -
Vivi7g00825 337 CDD SANT 109 154 IPR001005 -
Vivi7g00825 337 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Vivi7g00825 337 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
Vivi7g00825 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 156 IPR006447 GO:0003677
Vivi7g00825 337 MobiDBLite consensus disorder prediction 148 212 - -
Vivi7g00825 337 Gene3D - 108 160 - -
Vivi7g00825 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 158 IPR017930 -
Vivi7g00825 337 FunFam Transcription factor SRM1 3 69 - -
Vivi7g00825 337 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Vivi7g00825 337 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
Vivi7g00825 337 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Vivi7g00825 337 SUPERFAMILY Homeodomain-like 104 159 IPR009057 -
Vivi7g00825 337 MobiDBLite consensus disorder prediction 72 107 - -
Vivi7g00825 337 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Vivi7g00825 337 CDD SANT 9 56 IPR001005 -
Vivi7g00825 337 SMART sant 106 156 IPR001005 -
Vivi7g00825 337 SMART sant 6 58 IPR001005 -
Vivi7g00825 337 Gene3D - 8 55 - -
Vivi7g00825 337 MobiDBLite consensus disorder prediction 187 208 - -
Vivi7g00825 337 FunFam transcription factor MYB1R1 108 159 - -
Vivi7g00825 337 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00825 Vivi-Chr7 46972745 46975920 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi7g00825 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00825 - - vvo:131620511 603.208