Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00792 ATGAATGTTACTCGTTCTGCTCTGAAGCTCCATCTTCAAACCTCCCCAATTCGCTACCAATTCTTCTTCTCACGCTTCAACAATGCTCTTCGCAATCCCAACTCGTCTTCTTCTCTGTTCAATTTCAGAGCAAAGCGCTTCTTTTCTCTGACCCTTCCGCGCCAAACGCAGACGCAACCCTTTGTTGGAAGCGCCGTTTCGTCGACCTCGTCGGAGGATTTCAAAGGCCGTGACAGTTTCTTTGCTGAAGATAACGTTTCGTGGAGCTCACTTGGTTTATCTGATACAGTCTCTGTTGCTCTCGCTAATATTGGTCTTAAAACACCGTCTCTTGTTCAGGCTTCTTCTATACCGCCTGTTTTGTCAGGGAAGGATGTAGTTATTGCTGCCGAGACCGGAAGTGGTAAGACATACAGTTATCTACTTCCTCTTATTGATAAGCTGAGGGAGGCACAAGAACAATCTCTGGATGTTGTATCTGACAAAGAAGTCTATCCACCGGCTGGAAAAGTTCTGCTTGTGCTTTGTCCGAATGTGCAACTGTGTGAGCAGGTAGTTAAGATGGCTAATAGTCTTTGTGTCGAGAATGGTGGAACCATTGTTAATGCAGCATCCATTTGTGGAAGACAGGGATGGCCGATTCGGGAACCTGATATCATTGTGACGACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGGCGGCGCATGGAATTTATGCGTGGTGTCAAACATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGAAGCTTCCAGAATAAAGTAATCCGATTGATTCAATTGCTCCGCTATGATGAAAAACTTTTGTCTCGATCAAAAACATCAGAATCAGAATTGGCACTGAAAGTGGAGGAATCTTCTTTGTTGTCGGATGATGCTTTGGAAGCTGAAGACGAATTTCCACCTGAAGCCATCTCAGACGAGGAGGATGATGATAAAGAGGATCTTGTCATTATTGATGATGAAGCTGAATCTGTTAAGAAAACAAGAAGAGAGTGGAGGAGAGTGAGGAAACATTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACGCTTCCAGTGAATGGAAAGAAAACAGCTGGAGCATTATTAAAACACATGTTTCCTGATGCTGTGTGGGTTAGTGGAAACTATCTTCACCGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGAGCGTCGATACACAGGTGAAAGAACTCATAAAGGCTGTGAATCACGGTTTAGAATCTGAAGATTTGGATAGTGACGGTGGCATTCGTAGAACAATGGTGTTTGCCAACACTGTTGAAGCTGCCGAAGCTGTGGCAAAGATATTGAACTATACTGGGCTTGAGTGTTTACGTTATCATAAGAATTGCACACTGGAAGAGCGAGCACAGACATTAGTTGATTTCCACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAACGTCTTGCATGTTATTCAGATGATGATAGTCCAGCGGAGAAGGGGAAGTAAGTCGGGGAGTGGTGAGTCTGAGCATTTCATGCTTATACAGAGGCTGGGCAGGGCAGTGCTCGGGAGAGGAGGTTGA 1623 0.4436 MNVTRSALKLHLQTSPIRYQFFFSRFNNALRNPNSSSSLFNFRAKRFFSLTLPRQTQTQPFVGSAVSSTSSEDFKGRDSFFAEDNVSWSSLGLSDTVSVALANIGLKTPSLVQASSIPPVLSGKDVVIAAETGSGKTYSYLLPLIDKLREAQEQSLDVVSDKEVYPPAGKVLLVLCPNVQLCEQVVKMANSLCVENGGTIVNAASICGRQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMRGVKHVVFDEADMLLCGSFQNKVIRLIQLLRYDEKLLSRSKTSESELALKVEESSLLSDDALEAEDEFPPEAISDEEDDDKEDLVIIDDEAESVKKTRREWRRVRKHYERSKQYIFVAATLPVNGKKTAGALLKHMFPDAVWVSGNYLHRHNPRLKQRWIEVSVDTQVKELIKAVNHGLESEDLDSDGGIRRTMVFANTVEAAEAVAKILNYTGLECLRYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQMMIVQRRRGSKSGSGESEHFMLIQRLGRAVLGRGG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00792 540 Gene3D - 392 540 IPR027417 -
Vivi7g00792 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 381 IPR014001 -
Vivi7g00792 540 SMART ultradead3 105 400 IPR014001 -
Vivi7g00792 540 Pfam Helicase conserved C-terminal domain 433 534 IPR001650 -
Vivi7g00792 540 Pfam DEAD/DEAH box helicase 112 273 IPR011545 GO:0003676|GO:0005524
Vivi7g00792 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 535 IPR027417 -
Vivi7g00792 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 540 IPR001650 -
Vivi7g00792 540 SMART helicmild6 446 540 IPR001650 -
Vivi7g00792 540 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 509 - -
Vivi7g00792 540 Gene3D - 63 380 IPR027417 -
Vivi7g00792 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Vivi7g00792 540 CDD DEADc 100 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00792 Vivi-Chr7 45529195 45533271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00792 71 272 Eukaryotic Initiation Factors Gene Family AT3G13920 26.047 1.02e-10 62.0