Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00791 ATGAATGTTACTCGTTCTGCTCTGAAGCTCCATCTTCAAACCTCCCCAATTCGCTACCAATTCTTCTTCTCACGCTTCAACAATGCTCTTCGCAATCCCAACTCGTCTTCTTCTCTGTTCAATTTCAGAGCAAAGCGCTTCTTTTCTCTGACCCTTCCGCGCCAAACGCAGACGCAACCCTTTGTTGGAAGCGCCGTTTCGTCGACCTCGTCGGAGGATTTCAAAGGCCGTGACAGTTTCTTTGCTGAAGATAACGTTTCGTGGAGCTCACTTGGTTTATCTGATACAGTCTCTGTTGCTCTCGCTAATATTGGTCTTAAAACACCGTCTCTTGTTCAGGCTTCTTCTATACCGCCTGTTTTGTCAGGGAAGGATGTAGTTATTGCTGCCGAGACCGGAAGTGGTAAGACATACAGTTATCTACTTCCTCTTATTGATAAGCTGAGGGAGGCACAAGAACAATCTCTGGATGTTGTATCTGACAAAGAAGTCTATCCACCGGCTGGAAAAGTTCTGCTTGTGCTTTGTCCGAATGTGCAACTGTGTGAGCAGGTAGTTAAGATGGCTAATAGTCTTTGTGTCGAGAATGGTGGAACCATTGTTAATGCAGCATCCATTTGTGGAAGACAGGGATGGCCGATTCGGGAACCTGATATCATTGTGACGACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGGCGGCGCATGGAATTTATGCGTGGTGTCAAACATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGAAGCTTCCAGAATAAAGTAATCCGATTGATTCAATTGCTCCGCTATGATGAAAAACTTTTGTCTCGATCAAAAACATCAGAATCAGAATTGGCACTGAAAGTGGAGGAATCTTCTTTGTTGTCGGATGATGCTTTGGAAGCTGAAGACGAATTTCCACCTGAAGCCATCTCAGACGAGGAGGATGATGATAAAGAGGATCTTGTCATTATTGATGATGAAGCTGAATCTGTTAAGAAAACAAGAAGAGAGTGGAGGAGAGTGAGGAAACATTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACGCTTCCAGTGAATGGAAAGAAAACAGCTGGAGCATTATTAAAACACATGTTTCCTGATGCTGTGTGGGTTAGTGGAAACTATCTTCACCGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGAGCGTCGATACACAGGTGAAAGAACTCATAAAGGCTGTGAATCACGGTTTAGAATCTGAAGATTTGGATAGTGACGGTGGCATTCGTAGAACAATGGTGTTTGCCAACACTGTTGAAGCTGCCGAAGCTGTGGCAAAGATATTGAACTATACTGGGCTTGAGTGTTTACGTTATCATAAGAATTGCACACTGGAAGAGCGAGCACAGACATTAGTTGATTTCCACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAACGTCTTGCATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATCGGTCGTACTGCTAGAGCTGGTCAAAACGGACTAGTTACTAGCATGTACACCGAGTCCAACAGAGAGCTTGTACAGGCAGTTCGTCAAGCAGGGGAACTCGGTCTACCTGTGGAGACTGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAAAAGAAAGCAAATGCTGACAAAGTTAGAGATTCAGCAGCCATTGAAGAGACTGTTACAGCTTGA 1776 0.4398 MNVTRSALKLHLQTSPIRYQFFFSRFNNALRNPNSSSSLFNFRAKRFFSLTLPRQTQTQPFVGSAVSSTSSEDFKGRDSFFAEDNVSWSSLGLSDTVSVALANIGLKTPSLVQASSIPPVLSGKDVVIAAETGSGKTYSYLLPLIDKLREAQEQSLDVVSDKEVYPPAGKVLLVLCPNVQLCEQVVKMANSLCVENGGTIVNAASICGRQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMRGVKHVVFDEADMLLCGSFQNKVIRLIQLLRYDEKLLSRSKTSESELALKVEESSLLSDDALEAEDEFPPEAISDEEDDDKEDLVIIDDEAESVKKTRREWRRVRKHYERSKQYIFVAATLPVNGKKTAGALLKHMFPDAVWVSGNYLHRHNPRLKQRWIEVSVDTQVKELIKAVNHGLESEDLDSDGGIRRTMVFANTVEAAEAVAKILNYTGLECLRYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRIGRTARAGQNGLVTSMYTESNRELVQAVRQAGELGLPVETAFSRKRSFRNKLKKKANADKVRDSAAIEETVTA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00791 591 Gene3D - 64 380 IPR027417 -
Vivi7g00791 591 Pfam Helicase conserved C-terminal domain 433 526 IPR001650 -
Vivi7g00791 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Vivi7g00791 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 381 IPR014001 -
Vivi7g00791 591 SMART ultradead3 105 400 IPR014001 -
Vivi7g00791 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 567 IPR001650 -
Vivi7g00791 591 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 550 - -
Vivi7g00791 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 538 IPR027417 -
Vivi7g00791 591 Gene3D - 398 591 IPR027417 -
Vivi7g00791 591 Pfam DEAD/DEAH box helicase 112 273 IPR011545 GO:0003676|GO:0005524
Vivi7g00791 591 CDD SF2_C_DEAD 397 535 - -
Vivi7g00791 591 SMART helicmild6 446 526 IPR001650 -
Vivi7g00791 591 CDD DEADc 100 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00791 Vivi-Chr7 45528227 45533267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00791 340 554 Eukaryotic Initiation Factors Gene Family AT5G11170 27.064 2.30e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00791 - - gmx:100780518 828.935