Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00780 ATGAAGAGGTCCAAAGATGATGTTTACATGAGTTCACAACTCAAACGCCCCATGCTGTCTTCTAGAGGAGAACCCTCGGGGCAACCCCAGGTGATGAGTGGTGGTCAGAAGTTAACGACAAATGATGCCTTGTCATATCTAAAGGCAGTAAGAGAAATGTTTCAGGATGATAAAGAGAAGTACGATGAGTTTTTGGAAGTCATGAAGGATTTCAAGGCCCAAAGAATTGATACAGCTGGTGTCATAGAAAGAGTGAAGGAGCTTTTTAAAGGACATAAGGATTTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGCAATCACACTTCCATTGGAAGATGAACAACCTCCGCAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGGGCAAGATTAAGACTCGTTTTCAAGGCAATGACCGTGTTTACAAGACTTTTTTAGACATACTAAATATGTACAGAAAGGAAACCAAGTCTATCACAGTGGTTTACCAAGAGGTTTCCGCCCTCTTCCAAGACCATGCAGATCTTCTTGAGGAGTTTACTCATTTCCTTCCTGATACCTCTGGAGCAGCCTCTGCTCATTTTGCTTCTGCCCGGAATTCTCTTCGTGATAGGAGCTCTGCAATGGCAACAGCAAGGCAAATGCATGTTGACAAGAGAGAAAAGACAACAGCTTTGCATGCTGATCGTGATCTCAGTGTTGATCATCCTGATCCAGAACTGGACCGAGGTGTGATGAGGGCTGATAAGGAGCAGAGAAGACGCGAGAGAGAAAAGGACCGTAGAGAAGAGAGAGATAGGAGAGAACGGGATAGGGATGATAGAGATTATGATAATGACGATGAAAAGCTTGAGATGCGCCCTAACTCGTCCGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTGTAGTCCAGTGCTTGCTTTCCTTGAAAAAGTCAAGGAGAAGTTAAGAGGTCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAACTACTGGCATTGGTAGGTGATTTACTGGGAAAATATGCTGATATTATGGAGGGATTTGATGAGTTTGTGACACAATGTGAACAAAATGAAGGATTCCTTGCTGGTGTCATGAATAAAAAATCCTTGTGGAATGAAGGACATGGACAGAAACCAATGAAGGTAGAGGACAAGGACAGAGATCGTGACAGGGATGATGGGGTGAAAGAAAGGGATCGTGAACTTCGAGAAAGAGACAGATCCACTGGAATTGCCAACAAGGATGTTTCTATTCCTAAGGTGTCTTTAAGCAAGGACAAGTATGTAGGAAAACCTATAAATGAATTGGACCTTTCTAACTGTGAACAATGCACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGATAGCTAGCCAGAAAACTGAACTAGGTGAAGAAGTATTGAATGATCACTGGGTTTCTGTTACGTCTGGAAGTGAGGATTATTCCTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGACGACAGGTTTGAACTTGATATGTTGCTTGAGTCTGTTAATGTGACAAATAAGAGAGTTGAAGAGATCTTAGAGAAAGTTAATGCTAACATAATTCCAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCCCTAAATCTTAGGTGCATCGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTATTGAAAAAGAATGCATCTCTTGCTTTACCAGTGATATTAACCCGCTTGAAGCAGAAACAGGAGGAGTGGGCAAGATGCCGCGCAGATTTCAATAAAGTTTGGGCTGAAATATATTCGAAAAATTATCACAAATCACTTGATCACCGAAGCTTTTACTTTAAGCAGCAGGATGCAAAAAGCTTGAGCACTAAAGCCTTATTGGGAGAGATCAAAGAAATTAGCGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCCATTGCTGCTGGAAATAGACGGCCTATTCTTCCTAACTTGGAATTTGAGTATGCTGATCCAGAGATTCACGAAGATTTGTATCAACTTATAAAATATTCATGTGGAGAAGTTTGTACAACGGAACAATTGGATAAAGTCATGAAGATTTGGACAACATTTTTAGAACCTATACTTGGTGTGCCTTCTCGACTGCGCGTTCCTGAAGACACAGAAGATGCTGTCAAGGCTAAGAATGATTCTGCCAAAACTGGCACAACAAGTATTGGCAAGTGTCATAGTAGTCCTGGTGTTGGTCCTACCATGATGAATCCTAAGAATTTAACCACTAGTAGAAATGGGGATGCTAGTGTTCCATTTGAACAATTAAATTCCTGCAAAGAATGGCAAGCAAATGGAGTTGGTGGGGTTAAAGAGGATGATTGTCTCGAATCATACCGTTCTGGCCCTAAGACTGAAACTTTGGGAAGTAGTACACTGCAGGGTAAAATTCATATTGGTGCATCCATTCCTGATGAAGTATCAAGAGTCAATAAGCTAGATCATTCCATTGAACAGTTGGTGAATGCTAATGTCTCACTGTCCTCAGGAATGGAGCAAAGTAATGGAAGAACAAACATAAATAATGCAACAGGACTTGCTGCAACTCCGTCTAGACCTGGTTATGTTTCTAGTGAGGGAGGGCATGATTTACCTTCATCAGAGGGTGCTGATTCTACAAGACTAGATATGTCCACAAACGGGGCCATCACCAAAGACACCAAAGTTCACAGATCTCACAAAGAATCAGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTATGAAGAGGATAACTTTGCAGTTTATGCAAATGCTGGTCTGGAGGCAGTGCATAAAGGAAAAGATTGTAATACCAGTCAACAATACCAAAATAGACACGGGGAACAAAATTGTGGTGAAGCTGGAGGTGAAAATGAAAATGAGAGTGATGGAAGTCCTCATAGATCATCGGATGACAGTGAAAATGCGTCTGAGAATGGTGAGGTTTCTGGTACCGAGTCTGCTGATGGTGAGGAATGTTCTCGAGAAGAACATGAAGAGAATGGGGATCATGAACATGATAATAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCAGATGCCAATGATGTTGAAGGAGATGGAGCCTCGTTGCCATATTCAGAACGCTTTCTTCTCACAGTAAAGCCTCTGGTAAAACATGTTCGCCCGGTGTTGCACGGGAAAGGAAAGAATGTCCAAATTTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCAAAGATAAACTCATCCTCTGCTGAAAGGAAATGGAGAGGTTCAAATGATACAGGTTCTACTGATCAATATGGCAGGTTCATGAGTTCTCTTTACAGTTTGCTGGATGGTTCTTCTGATAATTCAAAATTTGAAGATGACTGTCGCGCTATTATTGGAACTCAGTCATATGTCTTGTTCACGTTAGACAAGCTAATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCAGTGCTACCGATGAGATGGATAACAAACTTCTTCAACTATATGCATATGAGCAATCAAGAAAACCTGGAAGCTTTGTGGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCGTCTACACCGCCCCGATTGTCTATTCAGTTGATGGATTACGGACACGATAAGCCTGAAGTGACTGCTGTGTCAATAGATCCTAATTTTTCAGCCTATCTGCACAACGACTTCCTATCTGTTGTCCCCGACAGCAAGGAAAAATCAGGAATTTTCTTGAAAAGGAATAAGCTAAAATGTGCCTGGAGTGATGAATTTCCAAGCCAGATTATGGATGGAGTACAAGTTACCAATGGTCTGGAGTGTAAGATTGCTTGCAATTCATCCAAGGTTTCATACGTTTTAGATACTGAAGACTCTCTATTTCGAACAAAACGGAGAAGGAGAATTCCGCATCCAAACAATTCTTATCGTGAACAAACGTCTTCAAACATTTGTTCAAGCAGAGCACAGCGGTTCTGCAAATTATTTTCCATCAAATGA 4176 0.4076 MKRSKDDVYMSSQLKRPMLSSRGEPSGQPQVMSGGQKLTTNDALSYLKAVREMFQDDKEKYDEFLEVMKDFKAQRIDTAGVIERVKELFKGHKDLILGFNTFLPKGYAITLPLEDEQPPQKKPVEFEEAINFVGKIKTRFQGNDRVYKTFLDILNMYRKETKSITVVYQEVSALFQDHADLLEEFTHFLPDTSGAASAHFASARNSLRDRSSAMATARQMHVDKREKTTALHADRDLSVDHPDPELDRGVMRADKEQRRREREKDRREERDRRERDRDDRDYDNDDEKLEMRPNSSACEDKSSLKSMCSPVLAFLEKVKEKLRGPEDYQEFLKCLHIYSREIITRQELLALVGDLLGKYADIMEGFDEFVTQCEQNEGFLAGVMNKKSLWNEGHGQKPMKVEDKDRDRDRDDGVKERDRELRERDRSTGIANKDVSIPKVSLSKDKYVGKPINELDLSNCEQCTPSYRLLPKNYPIPIASQKTELGEEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTNKRVEEILEKVNANIIPGDIPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYSKNYHKSLDHRSFYFKQQDAKSLSTKALLGEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFEYADPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPILGVPSRLRVPEDTEDAVKAKNDSAKTGTTSIGKCHSSPGVGPTMMNPKNLTTSRNGDASVPFEQLNSCKEWQANGVGGVKEDDCLESYRSGPKTETLGSSTLQGKIHIGASIPDEVSRVNKLDHSIEQLVNANVSLSSGMEQSNGRTNINNATGLAATPSRPGYVSSEGGHDLPSSEGADSTRLDMSTNGAITKDTKVHRSHKESVGHFKSEREEGELSPNGDYEEDNFAVYANAGLEAVHKGKDCNTSQQYQNRHGEQNCGEAGGENENESDGSPHRSSDDSENASENGEVSGTESADGEECSREEHEENGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSERFLLTVKPLVKHVRPVLHGKGKNVQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRGSNDTGSTDQYGRFMSSLYSLLDGSSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVASATDEMDNKLLQLYAYEQSRKPGSFVDIVYHENARVLLHDENIYRIECSSTPPRLSIQLMDYGHDKPEVTAVSIDPNFSAYLHNDFLSVVPDSKEKSGIFLKRNKLKCAWSDEFPSQIMDGVQVTNGLECKIACNSSKVSYVLDTEDSLFRTKRRRRIPHPNNSYREQTSSNICSSRAQRFCKLFSIK 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 881 956 - -
Vivi7g00780 1391 SUPERFAMILY PAH2 domain 309 373 IPR036600 GO:0006355
Vivi7g00780 1391 Coils Coil 532 552 - -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 1029 1057 - -
Vivi7g00780 1391 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 979 1070 - -
Vivi7g00780 1391 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 391 427 - -
Vivi7g00780 1391 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 396 427 - -
Vivi7g00780 1391 ProSiteProfiles PAH domain profile. 304 373 IPR003822 GO:0006355
Vivi7g00780 1391 PANTHER SIN3B-RELATED 36 1250 IPR039774 GO:0003714
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 753 788 - -
Vivi7g00780 1391 Coils Coil 253 273 - -
Vivi7g00780 1391 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 1001 1016 - -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 911 925 - -
Vivi7g00780 1391 Pfam Sin3 family co-repressor 461 551 IPR013194 -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 14 36 - -
Vivi7g00780 1391 SMART hdac_interact2seq4b 459 559 IPR013194 -
Vivi7g00780 1391 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 219 295 - -
Vivi7g00780 1391 Pfam C-terminal domain of Sin3a protein 1104 1352 IPR031693 -
Vivi7g00780 1391 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Vivi7g00780 1391 Pfam Paired amphipathic helix repeat 326 370 IPR003822 GO:0006355
Vivi7g00780 1391 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Vivi7g00780 1391 SUPERFAMILY PAH2 domain 35 105 IPR036600 GO:0006355
Vivi7g00780 1391 FunFam Paired amphipathic helix protein Sin3 42 104 - -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 750 788 - -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 1 36 - -
Vivi7g00780 1391 Gene3D Paired amphipathic helix 303 375 IPR036600 GO:0006355
Vivi7g00780 1391 FunFam Paired amphipathic helix protein SIN3 302 375 - -
Vivi7g00780 1391 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 926 949 - -
Vivi7g00780 1391 MobiDBLite consensus disorder prediction 210 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00780 Vivi-Chr7 44961874 44973596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00780 28 118 WRKY Transcription Factor Family AT4G12020 56.383 1.00e-22 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi7g00780 Sin3a_C 1.7e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00780 K11644 - gmx:100781798 2049.25